PavlidisLab/ndb

Issues

• Missing values should be appearing last when sorting variants

  #69 opened 8 months ago by arteymix
  0

• region search failing

  #68 opened 8 months ago by sanjarogic
  0

• Limit the number of variants queried under /variant

  #70 opened 8 months ago by arteymix
  0

• Update analytics.xhtml to use new Google Analytics 4 integration

  #63 opened a year ago by arteymix
  1

• Update paperpipe to Python 3

  #65 opened 2 years ago by arteymix
  0

• DtypeWarning: Columns (22,26) have mixed types.Specify dtype option on import or set low_memory=False.

  #64 opened 2 years ago by arteymix
  0

• Use pavlab-starter-parent to manage dependencies

  #54 opened 3 years ago by arteymix
  0

• Use a pooled javax.sql.DataSource implementation such as commons-dbcp2

  #60 opened 3 years ago by arteymix
  0

• org.omnifaces.exceptionhandler.FullAjaxExceptionHandler.logException FullAjaxExceptionHandler: An exception occurred during processing JSF ajax request. Error page '/WEB-INF/errorpag es/expired.xhtml' will be shown. javax.faces.application.ViewExpiredException: viewId:/variant.xhtml - View /variant.xhtml could not be restored.

  #59 opened 3 years ago by arteymix
  0

• org.apache.catalina.core.StandardWrapperValve.invoke Servlet.service() for servlet [Faces Servlet] in context with path [] threw exception java.lang.IllegalArgumentException: Either HTTP 500 or java.lang.Throwable error page is required in web.xml or web-fragment.xml. Neither was found.

  #58 opened 3 years ago by arteymix
  0

• com.sun.faces.application.view.FaceletViewHandlingStrategy.handleRenderException Error Rendering View[/paper.xhtml] javax.el.ELException: /paper.xhtml: An error occurred performing resource injection on managed bean paperView

  #57 opened 3 years ago by arteymix
  0

• Use gene alias in search to match results

  #56 opened 3 years ago by arteymix
  0

• Adjust the fixtures for the tests

  #55 opened 3 years ago by arteymix
  0

• Search by chromosome + single coordinate

  #26 opened 6 years ago by mbelmadani
  1

• SEO

  #47 opened 6 years ago by mbelmadani
  0

• Effect Conditional Colouring

  #14 opened 6 years ago by JacobsonMT
  3

• Modal screen hides under footer when dragged down to bottom.

  #29 opened 6 years ago by mbelmadani
  0

• Make scrollable variant table more evidently scrollable

  #27 opened 6 years ago by mbelmadani
  1

• Multiple database configuration files

  #37 opened 6 years ago by tesar-stepan
  3

• Add an 'export' property on the variant.

  #46 opened 6 years ago by mbelmadani
  1

• Should import pipeline be moved to a separate project?

  #39 opened 6 years ago by mbelmadani
  3

• Group alphabetically on rankings on the front page when ties occur.

  #38 opened 7 years ago by mbelmadani
  0

• Session expires and raw data modal screen doesn't not populate.

  #40 opened 6 years ago by mbelmadani
  1

• Adding info about data transformations for each paper

  #42 opened 6 years ago by sanjarogic
  1

• "UBC, Centre for High-throughput Biology" -> Michael Smith Laboratories

  #24 opened 9 years ago by ppavlidis
  0

• Suggestions for more columns/linkouts in variant tables

  #25 opened 9 years ago by ppavlidis
  0

• Paper table cells overflow when url is long.

  #28 opened 9 years ago by mbelmadani
  5

• Search for overlapping papers cause the Sources list to be wrong

  #30 opened 9 years ago by mbelmadani
  0

• Standardize import scripts

  #31 opened 7 years ago by mbelmadani
  0

• Update paper table for auto increment

  #32 opened 7 years ago by mbelmadani
  0

• Search by coordinate needs maximum value check

  #33 opened 7 years ago by mbelmadani
  0

• Export should use paper key instead of author name

  #34 opened 7 years ago by mbelmadani
  1

• Add number of variants in the gene list

  #35 opened 8 years ago by mbelmadani
  1

• How do we handle GL contigs?

  #36 opened 7 years ago by mbelmadani
  1

• Going from a publication's pop-up window to the publication's page

  #43 opened 7 years ago by sanjarogic
  0

• Adding a column name in the Publications table

  #44 opened 7 years ago by sanjarogic
  0

• Convert database schema to describe validation, de novo status and category as enums

  #45 opened 7 years ago by mbelmadani
  0

• Provide links in the application for all pages

  #15 opened 9 years ago by mbelmadani
  0

• Inheritance Information

  #18 opened 9 years ago by JacobsonMT
  1

• Sort by Severity

  #17 opened 9 years ago by JacobsonMT
  1

• Better Ranking List

  #20 opened 9 years ago by JacobsonMT
  2

• Variant Table Filtering

  #21 opened 9 years ago by JacobsonMT
  0

• Heatmap Symmetry

  #22 opened 9 years ago by JacobsonMT
  1

• New Name

  #11 opened 9 years ago by JacobsonMT
  8

• Extended Paper Information

  #12 opened 9 years ago by JacobsonMT
  1

• Papers page footer floats

  #41 opened 7 years ago by mbelmadani
  1

• LOF Information

  #16 opened 9 years ago by JacobsonMT
  2

• More Information on all publications table

  #19 opened 9 years ago by JacobsonMT
  2

• Search field dropdown has black background

  #23 opened 9 years ago by ppavlidis
  3

• Summary Stats on Variant View

  #13 opened 9 years ago by JacobsonMT
  0