there are some difference between your data and cptac offical website data

[zihaoxingstudy1]

thanks so much for your data and analysis about CPTAC, i find the gene's number, sample's number and values are different from CPTAC offical website tmt10 or itraq data

[caleb-lindgren]

I would recommend looking at the other threads where we've recently addressed this question. Let us know if you have any more questions.