PayneLab/cptac

Issues

• Zenodo request fails for BRCA clinical data

  #67 opened 14 days ago
  1

• Unable to import cptac version 1.5.14

  #66 opened 21 days ago
  1

• cptac package failing on import

  #65 opened 2 months ago
  0

• 429 Client Error: TOO MANY REQUESTS Error

  #64 opened 2 months ago
  2

• ValueError: Length mismatch: Expected axis has 1 elements, new values have 3 elements

  #63 opened 5 months ago
  1

• v1.5.11 not available on pip

  #62 opened 3 months ago
  2

• cptac 1.5.10 pandas

  #61 opened 5 months ago
  2

• `cptac` package failing on Import

  #60 opened 5 months ago
  3

• version question

  #59 opened 5 months ago
  2

• Proteomics dataframes between "umich" and "bcm"

  #58 opened 6 months ago
  0

• Fail to download the ucec proteomics data from bcm

  #57 opened 25 days ago
  2

• FFPE vs Frozen tissue filter

  #56 opened 7 months ago
  1

• Tissue source center

  #55 opened 7 months ago
  1

• R integration TypeError: object of type 'generator' has no len()

  #54 opened 7 months ago
  1

• How to best use the protein expression data

  #53 opened 8 months ago
  0

• Clinical data download fail

  #52 opened 8 months ago
  1

• KeyError: 'filesize' on cptac import

  #51 opened 8 months ago
  3

• KeyError: 'filename' on cptac import

  #50 opened 8 months ago
  2

• inconsistent data with PDC

  #49 opened 8 months ago
  1

• Tutorial 6: Easy integration with R link broken

  #48 opened 8 months ago
  3

• HttpResponseError on import

  #47 opened 8 months ago
  5

• The UCEC umich acetylproteomics data are note a suitable data frame formatThe ucec umich acetylproteomics data are note a suitable data frame format

  #46 opened 9 months ago
  1

• Error in cancer.py file

  #45 opened 9 months ago
  4

• CCRCC cancer proteomics data do not have normal tissue type in your latest cptac data

  #44 opened 9 months ago
  6

• i want to know the difference between the Cell paper pan-cancer cptac data and your processed data.

  #43 opened 9 months ago
  5

• Units of protein and RNA expression data

  #42 opened 10 months ago
  2

• download does not work

  #41 opened 10 months ago
  1

• `get_clinical()` function now generates an erro

  #40 opened 10 months ago
  2

• make CPTAC_BASE_DIR configurable

  #39 opened 10 months ago
  6

• tutorial is not compatible with current release

  #38 opened 10 months ago
  2

• Inquiry about pancancer data

  #37 opened 10 months ago
  1

• how to download the transcript-level not the gene-level data from CPTAC?

  #36 opened 10 months ago
  1

• With new framework, can't find all files

  #35 opened 10 months ago
  5

• discrepancy between downloaded datasets and issue downloading Colon data through R markdown...

  #34 opened 9 months ago
  3

• pancan.download() not working, insufficient internet

  #32 opened a year ago
  2

• Glycoproteomics

  #31 opened 2 years ago
  1

• Why is Pancreas proteomics data not centered at 0?

  #30 opened 2 years ago
  3

• the problem of colon cancer survival analysis

  #29 opened 2 years ago
  1

• the threshold about wgs_somatic_cnv_per_gene data

  #28 opened 2 years ago
  1

• there are some difference between your data and cptac offical website data

  #27 opened 2 years ago
  1

• Why your cptac proteome data's value of a gene differential from the tmt10.tsv from CPTAC offical website

  #26 opened 2 years ago
  6

• Request for LSCC data

  #25 opened 3 years ago
  3

• Document published CPTAC studies and those implemented in package

  #24 opened 3 years ago
  1

• ValueError: cannot find context for 'fork'

  #22 opened 3 years ago
  3

• cptac.utils.get_frequently_mutated() ValueError

  #21 opened 3 years ago
  4

• Problem getting data from Hnscc dataset

  #20 opened 3 years ago
  8

• Problem with xlrd >= 2.0.0

  #19 opened 3 years ago
  2

• how do you process the CPTAC spectral counts data?

  #18 opened 4 years ago
  2

• Some of the proteomics data are not in the same format

  #17 opened 4 years ago
  1

• List available versions of datasets

  #16 opened 4 years ago
  2