how do you process the CPTAC spectral counts data?

[ZihaoXingUP]

thanks for you giving the cptac data. i see your cptac data aren't the counts data, i want to know which method you used when you processed the CPTAC spectral counts data .

[samuelpayne]

All the data in CPTAC is TMT isobaric labeled data. Spectrum counts cannot be used with this kind of multiplexing. The quantitative data has been processed to achieve the numbers you see. The best place to learn about the method for that is in the link to publications.

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On Mon, Dec 28, 2020 at 5:53 PM ZihaoXing ***@***.***> wrote: thanks for you giving the cptac data. i see your cptac data aren't the counts data, i want to know which method you used when you processed the CPTAC spectral counts data . — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#18>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAS55ILZD7GECEDNS4IQZJ3SXER7VANCNFSM4VMUNO6Q> .

[caleb-lindgren]

You can access the publication links associated with the different datasets using this code:

import cptac
cptac.list_datasets()

We provide the same tables that were used in these publications. The methods section of each paper will describe the specifics of how the data was processed for that dataset.