i want to know the difference between the Cell paper pan-cancer cptac data and your processed data.

[zihaoxingstudy1]

i see the cell pan-cancer cptac paper data cptac-pancancer do not have OV cancer types ,but your cptac latest version data have OV pancer types. in your cptac older version, it have KIRC cancer cptac data, but now , it do not have the KIRC cancer data in your cptac latest version.

[samuelpayne]

by KIRC do you mean ccRCC?

[zihaoxingstudy1]

i mean kidney cancer in the CPTAC.  ***@***.***

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---- Replied Message ---- From Sam ***@***.***> Date 9/26/2023 00:22 To ***@***.***> Cc ***@***.***> , ***@***.***> Subject Re: [PayneLab/cptac] i want to know the difference between the Cell paper pan-cancer cptac data and your processed data. (Issue #43) by KIRC do you mean ccRCC? —Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you authored the thread.Message ID: ***@***.***>

[bm600]

You can see the available cancer options by inputting cptac.get_cancer_info(). It will print a dictionary of the available types. In the latest version kidney cancer (clear cell renal cell carcinoma) is abbreviated as ccrcc. Hope that helps!

[zihaoxingstudy1]

thanks. i download the BCM source ccrcc proteomics data . it only has 104 tumor samples in your data. ***@***.***

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---- Replied Message ---- From ***@***.***> Date 9/29/2023 01:16 To ***@***.***> Cc ***@***.***> , ***@***.***> Subject Re: [PayneLab/cptac] i want to know the difference between the Cell paper pan-cancer cptac data and your processed data. (Issue #43) You can see the available cancer options by inputting cptac.get_cancer_info(). It will print a dictionary of the available types. In the latest version kidney cancer (clear cell renal cell carcinoma) is abbreviated as ccrcc. Hope that helps! —Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you authored the thread.Message ID: ***@***.***>

[samuelpayne]

we'll look into that.