Strain-level Identification and Analysis of Avian Coronavirus Using Raman Spectroscopy and Interpretable Machine Learning
Project Page | Paper (TBD upon publication)
Strain-level Identification and Analysis of Avian Coronavirus Using Raman Spectroscopy and Interpretable Machine Learning
Peng Jin, Yin-Ting Yeh, Jiarong Ye, Ziyang Wang, Yuan Xue, Na Zhang, Shengxi Huang, Elodie Ghedin, Huaguang Lu, Anthony Schmitt, Sharon X. Huang, Mauricio Terrones.
ISBI 2023
The codes and the dataset will be updated once ready.
The details of IBV strains in our dataset is listed in the table below.
Table 1. A list of infectious bronchitic virus (IBV) reference sdtrains and field isolates
| Serial No. | IBV Strain Identification | IBV Strain Status |
|---|---|---|
| 1 | IBV-Mass | Vaccine Strain |
| 2 | IBV-H52 | Vaccine Strain |
| 3 | IBV-Conn | Vaccine Strain |
| 4 | IBV-Ark | Vaccine Strain |
| 5 | IBV-Del2868 | Reference Strain |
| 6 | IBV-Del072 | Reference Strain |
| 7 | IBV/PA/37658/97 | PA npIBV Starin |
| 9 | IBV-CA | Reference Strain |
| 10 | IBV-Iowa97 | Reference Strain |
| 11 | IBV-JMK | Reference Strain |
| 12 | IBV-MW34 | Reference Strain |
| 13 | IBV-Aust | Reference Strain |
| 14 | IBV/PA/36447/07 | Field Isolate |
| 15 | IBV/PA/36448/03 | Field Isolate |
| 16 | IBV/PA/36258/03 | Field Isolate |
| 17 | IBV/PA/36550/03 | Field Isolate |
| 18 | IBV/PA/36551/03 | Field Isolate |
| 19 | IBV/PA/36552/03 | Field Isolate |
| 20 | IBV/PA/36554/03 | Field Isolate |
| 21 | IBV/PA/36581/03 | Field Isolate |
| 22 | IBV/PA/36383/03 | Field Isolate |
| 23 | IBV/PA/36278/03 | Field Isolate |
| 24 | IBV/PA/07392/06 | Field Isolate |
| 25 | IBV/PA/31154/04 | Field Isolate |
| 26 | IBV/PA/36257/03 | Field Isolate |
| 27 | IBV/PA/17525/17 | Field Isolate |
| 28 | IBV/P/17534-/17 | Field Isolate |
| 29 | IBV/PA/18240/17 | Field Isolate |
| 30 | IBV/PA/22673/17 | Field Isolate |
| 31 | IBV/PA/22962/17 | Field Isolate |
| 32 | IBV-Iowa609 | Reference Strain |
If you find this work useful, please consider citing:
@inproceedings{peng2023strain,
title={Strain-level Identification and Analysis of Avian Coronavirus Using Raman Spectroscopy and Interpretable Machine Learning},
author={Peng Jin, Yin-Ting Yeh, Jiarong Ye, Ziyang Wang, Yuan Xue, Na Zhang, Shengxi Huang, Elodie Ghedin, Huaguang Lu, Anthony Schmitt, Sharon X. Huang, Mauricio Terrones},
booktitle = {International Symposium on Biomedical Imaging (ISBI)},
year = {2023},
}