Materials for the Fall 2022 KickStart Workshop
August 1 - 5th, 2022
Time: 1pm - 5pm each day
In person in Althouse's Blue Box
(for Zoom options, please contact Laura Weyrich)
- Laura Weyrich lsw132@psu.edu
- David Koslicki dmk333@psu.edu
- Emily Davenport exd44@psu.edu
- Sharifa Crandall sgcrandall@psu.edu
- Estelle Couradeau efc5279@psu.edu
- Darrell Cockburn dwc30@psu.edu
- Erika Ganda ganda@psu.edu
A PSU email and access to Penn State’s Roar system is required prior to the workshop. You can do this by going to https://accounts.aci.ics.psu.edu, and entering your information. For the purposes of this workshop, please list Laura Weyrich (lsw132) as your account sponsor and put "2022 Microbiome Center Summer Workshop" into the "Research Description" field of the account request form.
- Day 1 (OPTIONAL): Unix Basics and Intro to Programming - Emily Davenport
- Day 2: Basics of Microbiome Analysis - From Planning to Sequencing - Organizing Committee
- Day 3: Amplicon Data Analysis in R - Sharifa Crandall
- Day 4: Amplicon Data Analysis in QIIME2 - Erika Ganda and Laura Weyrich
- Day 5: Shotgun data analysis (assembly, binning, and profiling) - David Koslicki