sumrep is a package for summarizing, visualizing, and comparing immune receptor repertoires.
It contains dozens of different summary statistics to be applied on various levels of assumptions, from raw query reads to inferred phylogenies, as well as easy and principled ways to plot and compare repertoires.
It currently supports the IgH, IgL, IgK, TRA, and TRB loci.
Instructions for getting and using sumrep can be found via the following pages:
- Installation - steps for installing sumrep and optional annotation and simulation tools
- Usage - quickstart on how to use
sumrepto analyze and gain insights from your data, including examples - Extended documentation - in-depth breakdown of data specifications and functionality
- FAQ - frequently asked questions about
sumrep
Please submit an issue if you encounter a problem not addressed above!