Pinned Repositories
bph-use-case
Artifacts for the eMERGE benign prostatic hyperplasia (BPH) phenotype implemented in PhEMA
cql-on-omop
Runs CQL phenotype definitions against an OMOP repository
omoponfhir-extractor
Tool for extracting OMOP data as FHIR resource using OMOP on FHIR.
phekb-phenotypes
A selection of PheKB phenotypes represented using CQL and FHIR.
phema-author
PhEMA Authoring Tool
phema-library
phema-workbench-api
The JAVA API for the PhEMA Workbench.
phema-workbench-deploy
Deployment config for PhEMA Workbench.
qdm-knime
vsac_to_omop
This is a prototype application which transfers VSAC value sets to OMOP repository as concept sets
PhEMA's Repositories
PheMA/cql-on-omop
Runs CQL phenotype definitions against an OMOP repository
PheMA/phema-author
PhEMA Authoring Tool
PheMA/phekb-phenotypes
A selection of PheKB phenotypes represented using CQL and FHIR.
PheMA/vsac_to_omop
This is a prototype application which transfers VSAC value sets to OMOP repository as concept sets
PheMA/phema-workbench-api
The JAVA API for the PhEMA Workbench.
PheMA/phema-workbench-deploy
Deployment config for PhEMA Workbench.
PheMA/heart-failure-use-case
Artifacts for the PhEMA heart failure use case phenotype
PheMA/omoponfhir-extractor
Tool for extracting OMOP data as FHIR resource using OMOP on FHIR.
PheMA/DER
REST services over a data element repository
PheMA/clinical_quality_language
Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM) domains. This repository contains complementary tooling in support of that specification.
PheMA/cqf-ruler
CQL Measure Processing Component
PheMA/CQL-Testing-Framework
AHRQ-CDS CQL Testing Framework to allow CQL authors to more easily develop and run test cases for validating CQL-based CDS logic, regardless of how that CQL was developed (e.g., by hand, in the AT, etc). This is intended to be a developer-facing tool, run on the command-line; it has no server components.
PheMA/cql_engine
Clinical Quality Language Evaluation Engine
PheMA/cql_execution_service
Clinical Quality Language Execution Service
PheMA/deployments
Kubernetes cluster configs to use with Flux.
PheMA/elm-utils
Some tools for working with ELM libraries.
PheMA/ohdsi-atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
PheMA/ohdsi-json-schema-generator
PheMA/ohdsi-webapi
OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
PheMA/omoponfhir-main
Main OMOPonFHIR Settings
PheMA/omoponfhir-omopv5-jpabase
OMOPv5 JPABase to support OMOPonFHIR
PheMA/omoponfhir-stu3-server
OMOPonFHIR STU3 Server
PheMA/phekb-export
PheKB data exporter and viewer
PheMA/phema-hapi-fhir
PhEMA HAPI FHIR JPA Server
PheMA/phema-population-cql
Simple tool for running a CQL library for a population of patients.
PheMA/phema-workbench-app
The parts of the PhEMA Workbench that run in the browser.
PheMA/phema.github.io
The Phenotype Execution Modeling Architecture (PhEMA) project
PheMA/terminology-manager
Tool for converting terminology content in various formats into FHIR resources.
PheMA/thrombotic-event-phenotype
PheMA/vsac-wrapper
A VSAC-enabled code service for the CoffeeScript CQL Execution project