Reconstruction of the large scale connectome based on macaque ECoG data.
# compiler cython-integrated mutual-info estimator
cd mutual_information
pip install -e .
# install fcpy
cd ..
pip install -e .
Filename: preprocessed_data.npz
| Variable name |
Descriptions |
'stride' |
cumulative sum of number of channels in each area |
'adj_mat' |
measured weight adjacent matrix (area-wise) |
'weight' |
measured weight adjacent matrix (channel-wise) |
'data_series_raw' |
unfiltered data |
'data_series_delta' |
delta band filtered data (1-4 Hz) |
'data_series_theta' |
theta band filtered data (5-8 Hz) |
'data_series_alpha' |
alpha band filtered data (9-12 Hz) |
'data_series_beta' |
beta band filtered data (13-30 Hz) |
'data_series_gamma' |
gamma band filtered data (31-100 Hz) |
'data_series_high_gamma' |
high gamma band filtered data (55-100 Hz) |
| Variable name |
Descriptions |
'raw' |
tdmi data for unfiltered data |
'delta' |
tdmi data for delta band filtered data (1-4 Hz) |
'theta' |
tdmi data for theta band filtered data (5-8 Hz) |
'alpha' |
tdmi data for alpha band filtered data (9-12 Hz) |
'beta' |
tdmi data for beta band filtered data (13-30 Hz) |
'gamma' |
tdmi data for gamma band filtered data (31-100 Hz) |
'high_gamma' |
tdmi data for high gamma band filtered data (55-100 Hz) |
Filename: tdmi_data_shuffle.npz
| Variable name |
Descriptions |
'raw' |
shuffled tdmi data for unfiltered data |
'delta' |
shuffled tdmi data for delta band filtered data (1-4 Hz) |
'theta' |
shuffled tdmi data for theta band filtered data (5-8 Hz) |
'alpha' |
shuffled tdmi data for alpha band filtered data (9-12 Hz) |
'beta' |
shuffled tdmi data for beta band filtered data (13-30 Hz) |
'gamma' |
shuffled tdmi data for gamma band filtered data (31-100 Hz) |
'high_gamma' |
shuffled tdmi data for high gamma band filtered data (55-100 Hz) |
Filename: opt_threshold_*.npz
| Variable name |
Descriptions |
'raw' |
optimal threshold chosen by Youden Index criteria for unfiltered data |
'delta' |
optimal threshold chosen by Youden Index criteria for delta band filtered data (1-4 Hz) |
'theta' |
optimal threshold chosen by Youden Index criteria for theta band filtered data (5-8 Hz) |
'alpha' |
optimal threshold chosen by Youden Index criteria for alpha band filtered data (9-12 Hz) |
'beta' |
optimal threshold chosen by Youden Index criteria for beta band filtered data (13-30 Hz) |
'gamma' |
optimal threshold chosen by Youden Index criteria for gamma band filtered data (31-100 Hz) |
'high_gamma' |
optimal threshold chosen by Youden Index criteria for high gamma band filtered data (55-100 Hz) |
Filename: gc_order_n.npz, gc_shuffled_order_n.npz
| Variable name |
Descriptions |
'raw' |
GC data for unfiltered data |
'delta' |
GC data for delta band filtered data (1-4 Hz) |
'theta' |
GC data for theta band filtered data (5-8 Hz) |
'alpha' |
GC data for alpha band filtered data (9-12 Hz) |
'beta' |
GC data for beta band filtered data (13-30 Hz) |
'gamma' |
GC data for gamma band filtered data (31-100 Hz) |
'high_gamma' |
GC data for high gamma band filtered data (55-100 Hz) |