Pinned Repositories
snps
tools for reading, writing, merging, and remapping SNPs
DeepVariant
Deep Variant as a Nextflow pipeline
mag
Assembly and binning of metagenomes
antiviral-drug-repurposing
This side project was done for a PhD application research proposal as a proof of concept
attentive-parapred
Code for Attentive cross-modal paratope prediction
AutoPlate
RShiny app to automate the analysis of 96-well plates such as the fitting of dose-response curves for Pseduotype Micro Neutralisation (pMN) assays
docs
Notes for everything I know
lbf-hack-tutorial
Tutorial for London Bioinformatics Frontiers Hackathon (http://bioinformatics-frontiers.com) - intro to Nextflow, Docker, FlowCraft & Deploit
lightdock-nf
Nextflow pipeline to run LightDock for protein-protein docking
splicing-pipelines-nf
Repository for the Anczukow-Lab splicing pipeline
PhilPalmer's Repositories
PhilPalmer/AutoPlate
RShiny app to automate the analysis of 96-well plates such as the fitting of dose-response curves for Pseduotype Micro Neutralisation (pMN) assays
PhilPalmer/attentive-parapred
Code for Attentive cross-modal paratope prediction
PhilPalmer/docs
Notes for everything I know
PhilPalmer/lightdock-nf
Nextflow pipeline to run LightDock for protein-protein docking
PhilPalmer/utils
Random scripts
PhilPalmer/about-common-mechanism
R Markdown for Understanding the Common Mechanism and Suggestions for Improvement
PhilPalmer/Academia-hugo
PhilPalmer/biorisk-botecs
Back-of-the-envelope calculations (BOTECs) assessing different pandemic risks
PhilPalmer/biosecurity-trends
Analysis of trends in biosecurity
PhilPalmer/blog
My personal homepage built using the Hugo Academic Theme
PhilPalmer/cancer-prediction-pp502
PhilPalmer/configs
Config files used to define parameters specific to compute environments at different Institutions
PhilPalmer/cv
[LaTeX] My academic CV
PhilPalmer/CV-2
My curriculum vitae (CV) written using LaTeX.
PhilPalmer/data-downloader
Nextflow pipeline to download files using axel
PhilPalmer/deepvariant
Google's DeepVariant variant caller as a Nextflow pipeline
PhilPalmer/deepvariant-1
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
PhilPalmer/DeepVirFinder
Identifying viruses from metagenomic data by deep learning
PhilPalmer/genomad
geNomad: Identification of mobile genetic elements
PhilPalmer/github-stats
PhilPalmer/h3agwas
GWAS Pipeline for H3Africa
PhilPalmer/nf-fastq-dumper
Dump all fastqas from SRA project ID - just that
PhilPalmer/parapred
Paratope Prediction using Deep Learning
PhilPalmer/phewas
Performs a PheWAS analysis & generates a Manhattan plot using the PheWAS R package
PhilPalmer/PhilPalmer
PhilPalmer/RiboDetector
Accurate and rapid RiboRNA sequences Detector based on deep learning
PhilPalmer/snps
tools for reading, writing, merging, and remapping SNPs
PhilPalmer/STRONG
Strain Resolution ON Graphs
PhilPalmer/vertebrate_host_jumps
PhilPalmer/viral-mutation
Language modeling of viral evolution