A complete R pipeline with the analyses of CXCR4 expression, immune infiltration and differential gene expression in the PAAD TCGA cohort. The pipeline accompanies the manuscript by Koher et al (in revision). The pipeline can be deployed by sourcing 'exec_all.R'.
The required development packages are: clustTools (https://github.com/PiotrTymoszuk/clustTools), ExDA (https://github.com/PiotrTymoszuk/ExDA), microViz (https://github.com/PiotrTymoszuk/microViz), timerTools (https://github.com/PiotrTymoszuk/timerTools), gseaTools (https://github.com/PiotrTymoszuk/gseaTools), soucer (https://github.com/PiotrTymoszuk/soucer) and figur (https://github.com/PiotrTymoszuk/figur).