Cancer-Slide
Building a pipeline to take .vsi files from Olympus microscopes and split them into constituent images for use in ML methods
Setup
pip(3): requests, requests_toolkit, Pillow
conda (or pip): pandas
sudo apt-get install libgdiplus sudo apt-get install libgif-dev autoconf libtool automake build-essential gettext libglib2.0-dev libcairo2-dev libtiff-dev libexif-dev
Download, https://free.pathomation.com/download/, and run pathomation it should launch a server and web-browser interface. (If the URL is not http://localhost:54001/, then this will need to be changed in image_load.py)
In image_load.py set the slide directory to be "Root/path-to-files/"