Plant and Food Research
The New Zealand Institute for Plant and Food Research. Crown Research Institute. Contact Matthew Laurenson or Zane Gilmore for access.
New Zealand
Pinned Repositories
APSIMTools
Scripts for doing stuff pre and post apsim simulation
hidecan
Package to create hidecan plots for GWAS and differential expression results
machine-vision-acquisition
A playpen for generic machine vision acquisition workflows
MCHap
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
Moa
Lightweight workflows in bioinformatics:
ONT_CRISPR-Cas9_enrichment
Public Repository for publication workflows
openlava
openlava project
pyeagleio
Python library to interact with https://eagle.io/
pytomicropy
Python to Micropython converter
VariantAnalysis
A bioinformatic variant calling pipeline
Plant and Food Research's Repositories
PlantandFoodResearch/MCHap
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
PlantandFoodResearch/pytomicropy
Python to Micropython converter
PlantandFoodResearch/machine-vision-acquisition
A playpen for generic machine vision acquisition workflows
PlantandFoodResearch/hidecan
Package to create hidecan plots for GWAS and differential expression results
PlantandFoodResearch/ONT_CRISPR-Cas9_enrichment
Public Repository for publication workflows
PlantandFoodResearch/pyeagleio
Python library to interact with https://eagle.io/
PlantandFoodResearch/APSIM_Docker
Dockerfile and helper files to build Apsim Classic in a Docker container
PlantandFoodResearch/eFP-Browser
PlantandFoodResearch/pyserialdrivers
A collection of OOB serial drivers for interacting with predominantly environmental sensors
PlantandFoodResearch/sandpit
A demonstration repository
PlantandFoodResearch/aspire-lite
Aspire Asparagus Android app written by Alastair Hughes
PlantandFoodResearch/ckanext-pfr
Configuration and settings associated with PFR's CKAN instance
PlantandFoodResearch/20-by-2020
Data analysis for a collaborative project with FAR aiming to improve wheat yields
PlantandFoodResearch/AppSecret
R6 Package to Work with PKI and AES-256-CBC
PlantandFoodResearch/APSIM.Shared
PlantandFoodResearch/ApsimX
ApsimX is the next generation of APSIM
PlantandFoodResearch/assemblathon2-analysis
collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)
PlantandFoodResearch/docker-ckan
Docker Compose setup for CKAN
PlantandFoodResearch/Example-Tetraploid-Potato-VCF-PRJNA414303
Example tetraploid VCF from NCBI BioProject PRJNA414303
PlantandFoodResearch/github-automation
Scripts and tools to automate github
PlantandFoodResearch/KateLindyMaryamTestRepo
PlantandFoodResearch/LoggerPrograms
This repository contains programs written for controlling data loggers
PlantandFoodResearch/nextflow-demo
Various examples of using NextFlow in the PFR Environment
PlantandFoodResearch/PFR_Spinnaker_Ros_Node
Point Grey (FLIR) Spinnaker based camera driver (Blackfly S etc.)
PlantandFoodResearch/QuickTestMassBalanceCalculator
Quick test mass balance calculator. This is a shiny implementation of QTMB as developed in N messure it mange it SFF project.
PlantandFoodResearch/radar-twist
Repository for translating arduino interpreted radar speeds into ROS twist with covariance
PlantandFoodResearch/SVS
SVS tool development
PlantandFoodResearch/TEFingerprint
A Python3 library for transposon fingerprinting
PlantandFoodResearch/Tuber_bruising
Scripts for analysis of genetic components of tuber bruising
PlantandFoodResearch/Xcm_detection_using_Minion_Sequencing