PolarBean

I am a computational neuroscientist interested in spatially anchoring brain data 🧠🔬👨‍💻

Neural Systems Laboratory @ UiOOslo, Norway

Pinned Repositories

brainglobe-ccf-translator
A tool for translating between common coordinate frameworks using deformation matrices.
Language:Python40
PyNutil
Python library for brain-wide quantification and spatial analysis.
Language:Python4 2 251
allen2quicknii
Download Allen mouse datasets and format them for use in QuickNII
Language:Python0 1 00
allen_download_utilities
utilities i use when downloading images from the allen institute for brain science
Language:Python00
anipose
🐜🐀🐒🚶 A full system for robust 3D markerless tracking
Language:Python0 1 00
CellfHelp
Do you have a dataset of xyz neuron coordinates within allen brain space? With this tool you can find exactly which brain region each xyz point lies in.
Language:Python3 2 10
DeepSlice
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
Language:Python86 8 5219
DLC_ROI_tool
A tool for drawing ROIs on videos and analysing deeplabcut videos.
Language:Python31 3 177

PolarBean's Repositories

PolarBean/DeepSlice
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
Language:Python86 8 5219
PolarBean/allen2quicknii
Download Allen mouse datasets and format them for use in QuickNII
Language:Python0 1 00
PolarBean/allen_download_utilities
utilities i use when downloading images from the allen institute for brain science
Language:Python00
PolarBean/brainglobe-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
Language:Python0 0 00
PolarBean/brainglobe.github.io
brainglobe.info website
Language:Python0 0 00
PolarBean/pythonClubGit
a repository for learning git in the nesys python club
0 2 00
PolarBean/DeepSliceWeightsMQ
A repository for weights files related to DeepSlice
1 0
PolarBean/dzi-tar-svc
1 0
PolarBean/ebrains_wizard
Language:JavaScript0 0
PolarBean/globalnews
Language:TypeScript1 0
PolarBean/ijp-imagetoatlas
2D sections to 3D atlas registration with Fiji and QuPath
Language:Java0 0
PolarBean/iSponsorBlockTV
SponsorBlock client for all YouTube TV clients.
Language:Python0 0
PolarBean/keras-coordconv
Keras implementation of CoordConv for all Convolution layers
Language:Python1 0
PolarBean/KG-project-views-and-downloads
Language:Python1 0
PolarBean/neuroglancer
WebGL-based viewer for volumetric data
Language:TypeScript0 0
PolarBean/onlyoffice.github.io
Language:JavaScript0 0
PolarBean/open-neuroscience.github.io
new implementation of Open Neuroscience website
Language:Python0 0
PolarBean/openshift-test
Language:JavaScript1 0
PolarBean/PhotometryNotebooks
a series of notebooks for the analysis of Fiber Photometry
Language:Jupyter Notebook2 01
PolarBean/pianoputer
Use your computer keyboard as a "piano".
Language:Python0 0
PolarBean/PyNutil
Python library for brain-wide quantification and spatial analysis.
Language:Python0 0
PolarBean/python-lessons
Language:Jupyter Notebook2 0
PolarBean/QuickNII
https://quicknii.readthedocs.io
Language:ActionScript1 0
PolarBean/SCAR
Join our band of hyenas
Language:Jupyter Notebook3 0
PolarBean/scipy_KND_interpolator
SciPy library main repository
Language:Python0 0
PolarBean/tar-dzi-svc
1 0
PolarBean/tiff-dzi-tar-svc
Language:Java1 0
PolarBean/UGATIT
Official Tensorflow implementation of U-GAT-IT: Unsupervised Generative Attentional Networks with Adaptive Layer-Instance Normalization for Image-to-Image Translation (ICLR 2020)
Language:Python1 0
PolarBean/WebAlign
https://webalign.readthedocs.io
Language:HTML0 0
PolarBean/WebWarp
https://webwarp.readthedocs.io
Language:JavaScript0 0