Pooran-Dewari
Core Scientist at Roslin Institute, UoE. Lead method optimisation and bioinformatics pipeline developer for ChIP-seq datasets at AQUA-FAANG consortium
Roslin Institute, University of EdinburghEdinburgh, UK
Pinned Repositories
bash-one-liners
chromHMM-states-distance-from-TSS
create-blacklist-fie-for-ChIP-seq-analysis
Installation and running umap and blacklist packages for ChIP-seq
Euler_ATAC_ChIPmarks
Find overlap between ATAC peaks and ChIP peaks by score
fimo_parallelise
Run FIMO on mutliple DNA sequences against all JASPAR2022 TF motifs
get-homologues-biomaRt
Get Atalantic salmon homologue from human uniprot IDs
GFF3_to_EMBL_format
GFF3_to_EMBL_format
gimme-maelstrom-on-chromHMM-output
Nextflow-pipeline-Extract-precise-location-of-gimme-maelstrom-TF-motifs
The precise location of TF motifs is missing in gimme maelstrom TFBS outputs. This nextflow pipeline outputs the precise location of TF motifs.
snp_array_analysis_nextflow_modules
Pooran-Dewari's Repositories
Pooran-Dewari/create-blacklist-fie-for-ChIP-seq-analysis
Installation and running umap and blacklist packages for ChIP-seq
Pooran-Dewari/bash-one-liners
Pooran-Dewari/chromHMM-states-distance-from-TSS
Pooran-Dewari/Euler_ATAC_ChIPmarks
Find overlap between ATAC peaks and ChIP peaks by score
Pooran-Dewari/fimo_parallelise
Run FIMO on mutliple DNA sequences against all JASPAR2022 TF motifs
Pooran-Dewari/get-homologues-biomaRt
Get Atalantic salmon homologue from human uniprot IDs
Pooran-Dewari/GFF3_to_EMBL_format
GFF3_to_EMBL_format
Pooran-Dewari/gimme-maelstrom-on-chromHMM-output
Pooran-Dewari/IDR_ATAC
Pooran-Dewari/Nextflow-pipeline-Extract-precise-location-of-gimme-maelstrom-TF-motifs
The precise location of TF motifs is missing in gimme maelstrom TFBS outputs. This nextflow pipeline outputs the precise location of TF motifs.
Pooran-Dewari/snp_array_analysis_nextflow_modules
Pooran-Dewari/IDR_chipseq
Run IDR pairwise on ChIP-seq replicates
Pooran-Dewari/Learning-R-and-Statistics
Pooran-Dewari/make_pca_plots
Make pca plots using matrix file (e.g. nfcore output)
Pooran-Dewari/nanopore_sequencing_analysis
Pooran-Dewari/Nextflow-pipeline-example
Introduction to how to create a basic nextflow pipeline using your own singularity container
Pooran-Dewari/nextflow_learning
small simple examples of nextflow scripts to automate tasks
Pooran-Dewari/parse_single_cell_analysis
Pooran-Dewari/Pooran-Dewari.github.io
Pooran-Dewari/quick_ortho_search
Pooran-Dewari/R-scripts
Collection of R scripts for quick reference to functions and other bits
Pooran-Dewari/scRNA-seq-analysis-using-custom-genome-reference
scRNA-seq analysis using custom genome reference
Pooran-Dewari/seurat5_via_conda
seurat5_via_conda
Pooran-Dewari/seurat_scripts
Pooran-Dewari/SNP_array_nextflow
Pooran-Dewari/test_overlap
Pooran-Dewari/testing-rmd
Pooran-Dewari/txdb_orgDb_ensDb_non_model_organisms