/single-cell

Protocol for Single-Cell transcriptomic Analysis of Cell Fate Transitions during Cellular Reprogramming

Primary LanguagePythonMIT LicenseMIT

single-cell

Protocol for Single-Cell transcriptomic Analysis of Cell Fate Transitions during Cellular Reprogramming

Setup

Make sure you have anaconda installed on your machine. Clone this repo, open a terminal and change your directory to the single-cell folder. Follow the below steps for setup.

conda create -y --name singlecell python=3.8
conda activate singlecell
pip install -r requirements.txt

Running the analysis

Once you are setup, extract the files available in the /data folder before running the below command.

python scrun.py

Figures from running the script show up in the figures folder.