Hood-Price Lab for Systems Biomedicine
The Hood-Price Lab at the Institute for Systems Biology is integrating biology, technology and computational science to enable a P4 approach to Medicine.
Seattle, WA
Pinned Repositories
Aging_Workshop_24
Course materials for the Systems Biology Of Aging Virtual Workshop 24
AgingMicrobiome
Aging Microbiome paper Wilmanski et. al.
Bile_acid_AD
fimoService
The meme suite's fimo (find motif) as a microservice, written in python, with R and python clients
MotifDb
This is a space for developing the MotifDb Package. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/MotifDb.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=MotifDb.
Multiomics-BMI
This repository includes the code used in our multiomics BMI study.
probannopy
A python package for Probanno!
ShannonMets
** Blood metabolome predicts gut microbiome α-diversity in humans**
snapr
SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis
TReNA-Legacy
Fit transcriptional regulatory networks using gene expression, priors, machine learning
Hood-Price Lab for Systems Biomedicine 's Repositories
PriceLab/Multiomics-BMI
This repository includes the code used in our multiomics BMI study.
PriceLab/Aging_Workshop_24
Course materials for the Systems Biology Of Aging Virtual Workshop 24
PriceLab/AgingMicrobiome
Aging Microbiome paper Wilmanski et. al.
PriceLab/fimoService
The meme suite's fimo (find motif) as a microservice, written in python, with R and python clients
PriceLab/MotifDb
This is a space for developing the MotifDb Package. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/MotifDb.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=MotifDb.
PriceLab/DOCKET
The Dataset Overview, Comparison and Knowledge Extraction Tool
PriceLab/Statins_microbiome_project
PriceLab/BioShiny
R/Shiny widgets for molecular biology
PriceLab/Pareto_Paper
PriceLab/translator-bigquery-api
This is the API for the translator biqquery project
PriceLab/trena
PriceLab/WGCNA-Metabolon-Code
PriceLab/endophenotypeExplorer
tools to explore associations between eQTLs, variants, gene expression and gene regulation
PriceLab/TrenaMultiScore
create and explore TFBS/targetGene data assembled from many sources
PriceLab/bigFimo
PriceLab/CHD1
explore the regulation of CHD1 in hematopoiesis
PriceLab/geneReg-2021
source data and database fill code related to gene regulation: TF ChIP, RNA-binding, miRNA
PriceLab/ghdb
access to a local PostgreSQL version of GeneHancer
PriceLab/kats
a variety of kernel association tests
PriceLab/kg-explorations
some projects using graphs assembled from various sources
PriceLab/kg-reactome
transform reactome into entities and relationships, ready for import into knowledge graphs
PriceLab/lcApps
webapps for the longevity consortium
PriceLab/loganCenterHistory
analysis and visualization for Jen Eklund
PriceLab/nooa
N-of-1 analyzer: an exploration
PriceLab/TrenaProjectAD
PriceLab/TrenaProjectADMouse
explorations related to the Jackson Lab AD mouse
PriceLab/TrenaProjectErythropoiesis
transcriptional control during erythropoiesis
PriceLab/TrenaProjectHG38
data and functions with which to build (roughly) tissue-specific trena models
PriceLab/TrenaProjectMouseBrain
Data and methods for building gene regulatory models of mouse brain
PriceLab/trrust
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions