Princeton-LSI-ResearchComputing/tracebase

Issues

• Incorrect multiple representations error suggestion

  #1297 opened a day ago by hepcat72
  0

• The conversion of `accucor` to `unicorr` results in an incorrect formula on rows when there is no `C12 PARENT` row for a compound

  #1300 opened 7 hours ago by hepcat72
  1

• Cannot run `load_animals` when any (optional) `age` values are missing

  #1299 opened 7 hours ago by hepcat72
  0

• Optimize loading code

  #1298 opened a day ago by hepcat72
  0

• Quell console outputs

  #1296 opened a day ago by hepcat72
  0

• Document `MaintainedModel` and `HierCachedModel` better

  #1295 opened a day ago by hepcat72
  0

• Document Tracebase exceptions better

  #1294 opened a day ago by hepcat72
  0

• `mzXML`/`PeakGroup`/`MSRunSample` relationship refactor

  #1238 opened a month ago by hepcat72
  0

• `AggregatedErrors Summary` gets printed thrice when running `load_study`

  #1242 opened 23 days ago by hepcat72
  0

• Add the ability to extract sample names from csv files whose format cannot be narrowed down

  #1291 opened 2 days ago by hepcat72
  0

• csv/tsv peak annotation file exception on submission start page

  #1289 opened 2 days ago by hepcat72
  0

• `3.1.1-beta` Release

  #1288 opened 4 days ago by hepcat72
  0

• Advanced Search Bulk File Download

  #1261 opened 21 days ago by hepcat72
  4

• Make the advanced search results table buttons use bootstrap

  #1287 opened 6 days ago by hepcat72
  0

• Field comparison in advanced search

  #1286 opened 7 days ago by hepcat72
  0

• Update the polarity table path in the peakgroups and peakdata search formats

  #1283 opened 9 days ago by hepcat72
  0

• Formalize Requirements Spec for Integrating Automatically Picked Peaks into TraceBase

  #1282 opened 9 days ago by hepcat72
  0

• Advanced Search Stats can timeout on very large sets of search results

  #1281 opened 9 days ago by hepcat72
  0

• Javascript drag and drop interface for mzXML files that creates the md5checksum and populates a sheet

  #1267 opened 15 days ago by hepcat72
  2

• Add proper support for many-to-many field searches

  #1268 opened 14 days ago by hepcat72
  2

• Show mz files in the advanced search peakdata and peakgroups formats

  #1262 opened 11 days ago by hepcat72
  0

• Associate `mzXML` files with `MSRunSequence` records when the names are not unique

  #1263 opened 11 days ago by hepcat72
  0

• Create a column in the `Peak Group Conflicts` sheet to indicate pre-existing `PeakGroup`s in the DB

  #1232 opened a month ago by hepcat72
  1

• Submission start - Copy/paste sequence metadata feature

  #1233 opened a month ago by hepcat72
  0

• Convert the tsv templates into iterator methods that use a csv writer

  #1280 opened 13 days ago by hepcat72
  0

• Add `MaintainedModel` fields for calculated cached properties to facilitate mzXML search

  #1279 opened 13 days ago by hepcat72
  0

• Add samples with mzxml count column to the infusates page

  #1278 opened 13 days ago by hepcat72
  0

• Add an mzXML count column to the samples page

  #1277 opened 13 days ago by hepcat72
  0

• Link Animal Details pages to the mzxmls advanced search

  #1276 opened 13 days ago by hepcat72
  0

• Add a samples with mzxmls count column to the animals page

  #1275 opened 13 days ago by hepcat72
  0

• Add a samples with mzXML count column to the Studies page

  #1274 opened 13 days ago by hepcat72
  0

• Add an mzXML tile to the home page

  #1273 opened 13 days ago by hepcat72
  0

• Create a new advanced search format named mzXMLs

  #1272 opened 13 days ago by hepcat72
  0

• Add built-in support for displaying fields that go through multiple many-to-many relations in advanced search results

  #1270 opened 14 days ago by hepcat72
  0

• Account for empty mzxml files

  #1258 opened 15 days ago by hepcat72
  0

• Summarize `MzXMLSkipRowError` exceptions.

  #1260 opened 21 days ago by hepcat72
  0

• Summarize `NoTracerLabeledElements` exceptions

  #1259 opened 21 days ago by hepcat72
  0

• Parent compounds not getting `PeakDataLabel` records with count 0

  #1255 opened 21 days ago by hepcat72
  0

• PeakData Advanced search annotation file column empty

  #1253 opened 21 days ago by hepcat72
  0

• Exception on PeakGroup Advanced Search Labeled Element sort

  #1252 opened 21 days ago by hepcat72
  0

• Incorrect corrected abundance values

  #1250 opened 21 days ago by hepcat72
  0

• Edit the required columns in the Peak annotation details sheet to alternatively accept a value in the skip column if the sequence is missing

  #1241 opened 21 days ago by hepcat72
  0

• Exceptions related to adding the `--mzxml-dir` option

  #1248 opened 21 days ago by hepcat72
  0

• Improve the `MSRunsLoader` design

  #1257 opened 22 days ago by hepcat72
  0

• Link to `MSRunSample` table on the `MSRunSequence` details page goes to a table of all (instead of the subset)

  #1249 opened 23 days ago by hepcat72
  0

• Either template generation or validation is including time in the date columns

  #1244 opened 23 days ago by hepcat72
  0

• Create a specific exception class for mzXML same-filename warnings

  #1243 opened 23 days ago by hepcat72
  0

• Type on Archive File Details page

  #1237 opened a month ago by hepcat72
  0

• Test the running time of the submission start page when PeakGroups already exist in the DB

  #1230 opened a month ago by hepcat72
  0

• Clean up submission interface debug prints once the code is finalized/sable

  #1231 opened a month ago by hepcat72
  0