/visualize_HW

Python script to visualize helical wheels based on input sequence.

Primary LanguagePythonMIT LicenseMIT

Simple visualization of a sequence in a helical wheel

Authors: Katrin Reichel
Company:ProteinQure Inc. <https://www.proteinqure.com>
Year:2019
Licence:MIT License
Copyright: © 2019 Katrin Reichel

Description

The provided python script generates a helical wheel based on an input sequence. For a random sequence it looks like this:

/img/hw_example.png

Dependencies and Software Requirements

  • Python (>=3.6)
  • Python packages: numpy, matplotlib

Usage

To generate a helical wheel with an input sequence, simply do the following:

python hw_visualization.py \
   -s ACDEFGHIKLMNPQRSTVWYACDE \
   -o hw_output.png

Help

Please, if you encounter any issues with the tool, open an issue here on the github repository https://github.com/proteinqure/visualize_hw/issues.

If you have any questions or suggestions, please contact team@proteinqure.com.