Q-KIM

Q-KIM's Stars

• CSSEGISandData/COVID-19

  Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

  29.1k18.4k

• broadinstitute/infercnv

  Inferring CNV from Single-Cell RNA-Seq

  Language:R548161

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.1k960

• Xinglab/rPGA

  Language:Python135

• jokergoo/ComplexHeatmap

  Make Complex Heatmaps

  Language:R1.3k223

• PoisonAlien/maftools

  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

  Language:R437217

• JustinaZ/pcaReduce

  Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"

  Language:R1911

• bmvdgeijn/WASP

  WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery

  Language:Python10252

• AllenInstitute/AllenSDK

  code for reading and processing Allen Institute for Brain Science data

  Language:Jupyter Notebook339150

• srp33/TCGA_RNASeq_Clinical

  Language:HTML6039

• Q-KIM/GTEx

  eQTL Detection from GTEx data

  Language:Python2

• epierson9/ZIFA

  Zero-inflated dimensionality reduction algorithm for single-cell data

  Language:Python10624

• dreamtools/dreamtools

  Code sharing related to DREAM challenges

  Language:Python2311

• berkmancenter/tagteam

  Enhanced Social Tagging for Academic Communities

  Language:Ruby9330

• Q-KIM/ginkgo

  Cloud-based single-cell copy-number variation analysis tool

  Language:JavaScript1

• Q-KIM/D3E

  Discrete Distributional Differential Expression

  Language:Python1

• hemberg-lab/D3E

  Discrete Distributional Differential Expression

  Language:Python229

• hdng/clonevol

  Inferring and visualizing clonal evolution in multi-sample cancer sequencing

  Language:R14145

• CGATOxford/cgat

  Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps

  Language:Python12466

• wueric/SplicePlot

  Easily draw publication-quality figures of splicing quantitative trait loci

  Language:OpenEdge ABL1710

• cdeboever3/cdpipelines

  Analysis pipelines.

  Language:Python32

• taylorLab/LaggingStrand

  Exploring the relationships between DNA replication and mutation.

  Language:R21

• 23andMe/RestKit

  RestKit is a framework for consuming and modeling RESTful web resources on iOS and OS X

  Language:Objective-C55

• googlegenomics/readthedocs

  Documentation for the Google Genomics cookbook.

  14249

• andrej-fischer/cloneHD

  High-definition reconstruction of clonal composition from next-generation sequencing data

  Language:C++3910

• mskcc/vcf2maf

  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  Language:Perl365215

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.8k500