• “MainCode.R” The file is used for searching networks initiated from each gene located on the human functional protein interaction (FI) database. Input: the gene expression data of breast cancer patients; survival time of breast cancer patients; protein-protein interaction database;
Datasets:
• Training set The breast cancer patients dataset used as training set can be downloaded from the additional file 1 in paper PMID: 23618380.
• Test set The breast cancer patients datasets used as test set can be downloaded from the GEO database, referenced by accession number GSE25066.
• “FIdatabase.txt” The document of human functional protein interaction (FI) database can be downloaded from the paper PMID: 20482850.
• “ProlferationGene.txt” The document of proliferation genes used for classifying patients into different proliferation tertile can be downloaded from the paper PMID: 23618380.
• “BP.txt” and “KEGG.txt” The document of biological process sets and the KEGG pathway sets downloaded from the MSigDB database of GSEA website.