QTIM-Lab/DeepNeuro

Issues

• When I pulled the skull-stripping module, it would not run

  #61 opened 6 months ago by TSbme
  0

• 。

  #62 opened 6 months ago by TSbme
  0

• HTTP Error 400 while running Segment_GBM module on the command line

  #49 opened 5 years ago by giemmecci
  10

• fail to import preprocessing module

  #60 opened 2 years ago by glzhs
  0

• Dropbox links broken for notebook sample data

  #48 opened 5 years ago by michaelabuchanan
  2

• HTTP Error 400 while running Segment_GBM

  #56 opened 5 years ago by kbenahmed89
  3

• HTTPError: HTTP Error 400: Bad Request - loading 'sample_gbm_nifti' sample data

  #59 opened 5 years ago by jayurbain
  0

• HTTP Error 400: bad request

  #58 opened 5 years ago by tyronepower
  0

• PermissionError Errno 13 - docker - Brain metastases segmentation

  #55 opened 5 years ago by giemmecci
  2

• ValueError: could not broadcast input array from shape (64,64,8,2) into shape (64,64,8,3)

  #54 opened 5 years ago by agatadefr
  3

• FileNotFoundError: No such file or no access

  #52 opened 5 years ago by agatadefr
  5

• ValueError: Cannot create group in read only mode

  #53 opened 5 years ago by agatadefr
  0

• KeyError: running glioblastoma segmentation from command line

  #50 opened 5 years ago by agatadefr
  4

• about the ADNI dataset

  #51 opened 5 years ago by linxueya
  0

• Create data converters for DICOM-RT data

  #47 opened 5 years ago by AnnaBeers
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• Refactor Data Transformation Code

  #10 opened 6 years ago by AnnaBeers
  1

• Move from Python 3.5 to 3.6

  #46 opened 5 years ago by AnnaBeers
  0

• Suggestions for Improvement

  #4 opened 5 years ago by changken1
  1

• typo on ischemic

  #45 opened 5 years ago by JonathanChiang
  2

• ValueError: bad marshal data (unknown type code)

  #43 opened 6 years ago by ujjwalbaid0408
  1

• Test Suites

  #7 opened 7 years ago by AnnaBeers
  1

• Pre-emptive error notices.

  #36 opened 6 years ago by AnnaBeers
  2

• Support for TPU (in Colab or otherwise)

  #37 opened 6 years ago by AnnaBeers
  0

• Error-Catching for bad cases in data groups.

  #23 opened 6 years ago by AnnaBeers
  1

• Create save-out function for any format.

  #17 opened 6 years ago by AnnaBeers
  1

• Parallel inference.

  #9 opened 6 years ago by AnnaBeers
  0

• Refactor DICOM conversion for DeepNeuro

  #35 opened 6 years ago by AnnaBeers
  0

• Log files

  #32 opened 6 years ago by jmbrown89
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• Is there any plan about upgrade to Python 3.x?

  #30 opened 6 years ago by Qinka
  1

• windows support?

  #28 opened 6 years ago by bgongsi
  1

• Multi-sequence inputs stored as 4D niftis are not handled correctly

  #27 opened 6 years ago by jmbrown89
  0

• Create more efficient patching practices for training data.

  #18 opened 6 years ago by AnnaBeers
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• Remove excessive print statements during augmentation phase

  #5 opened 6 years ago by jmbrown89
  2

• Replace xrange for Python 3.x compatibility

  #24 opened 6 years ago by eashvere
  3

• Create internal practices regarding batch dimensions, channel dimensions.

  #11 opened 6 years ago by AnnaBeers
  1

• Integrate neurodocker with DeepNeuro.

  #21 opened 6 years ago by AnnaBeers
  0

• Train/Test Splits with Patient/Identifier Groupings

  #20 opened 6 years ago by AnnaBeers
  0

• Embed radiomics tools from qtim_tools into DeepNeuro as either a "model", or and "output", or both.

  #16 opened 6 years ago by AnnaBeers
  0

• Create a .deepneuro file that manages the locations of external packages like 3DSlicer

  #15 opened 6 years ago by AnnaBeers
  0

• Handling different input volume dimensions

  #6 opened 7 years ago by jmbrown89
  1

• Create an "un-preprocessing" pipeline

  #13 opened 6 years ago by AnnaBeers
  0

• Templating for DeepNeuro modules.

  #8 opened 7 years ago by AnnaBeers
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• Transfer data-type conversion utilities from qtim_tools to DeepNeuro

  #1 opened 7 years ago by AnnaBeers
  0

• Patch-searching heuristic

  #2 opened 7 years ago by AnnaBeers
  0