Simpson lab (QUB)

Prof David Simpson's lab @ Queen's University Belfast (WWIEM)

United Kingdom

Pinned Repositories

fastq_subsetter
A C++ tool for downsampling fastq reads
Language:C++00
HIVE_browser
Heatmap for Interactive Viewing of Expression data
Language:HTML00
SARS-CoV-2-Ireland
Language:JavaScript10
cell_bam_splitter
a C++ tool for splitting BAMs into their single cells by barcode.
00
fastq_trimmer
A C++ tool for hard-trimming fastq reads
Language:C++00
ncov
Nextstrain build for novel coronavirus SARS-CoV-2
Language:Python00
paper-sars-cov-2-intros-to-ireland
SARS-CoV-2 introductions to the island of Ireland
Language:Jupyter Notebook00
ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Language:Nextflow01

QUB-Simpson-lab/HIVE_browser
Heatmap for Interactive Viewing of Expression data
Language:HTML
QUB-Simpson-lab/fastq_subsetter
A C++ tool for downsampling fastq reads
Language:C++
QUB-Simpson-lab/ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Language:Nextflow1
QUB-Simpson-lab/fastq_trimmer
A C++ tool for hard-trimming fastq reads
Language:C++
QUB-Simpson-lab/cell_bam_splitter
a C++ tool for splitting BAMs into their single cells by barcode.
QUB-Simpson-lab/SARS-CoV-2-Ireland
Language:JavaScript1
QUB-Simpson-lab/paper-sars-cov-2-intros-to-ireland
SARS-CoV-2 introductions to the island of Ireland
Language:Jupyter Notebook
QUB-Simpson-lab/ncov
Nextstrain build for novel coronavirus SARS-CoV-2