Qile0317
CS student at the University of California, Berkeley with interests in compBio + AI
University of California, BerkeleyCalifornia, USA
Pinned Repositories
scRepertoire
A toolkit for single-cell immune profiling
APackOfTheClones
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
APackOfTheClonesAppendix
Supplemental materials repository for the R package APackOfTheClones and its companion Journal Of Open Source Software paper.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Bacteria-Classifier-CNN
A resnet50 bacterial genus/strain classifier from the dibas dataset.
Chainable.jl
Simplified function chaining in Julia.
FastUtils
R package for readable, and fast utility functions.
KmerGMA.jl
A seed-based homology searching tool
SimplePdfMerger
A simple pdf merging desktop application
SoFoCompBio22
Updates and analysis scripts for my SoFo project.
Qile0317's Repositories
Qile0317/APackOfTheClones
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
Qile0317/Chainable.jl
Simplified function chaining in Julia.
Qile0317/KmerGMA.jl
A seed-based homology searching tool
Qile0317/FastUtils
R package for readable, and fast utility functions.
Qile0317/APackOfTheClonesAppendix
Supplemental materials repository for the R package APackOfTheClones and its companion Journal Of Open Source Software paper.
Qile0317/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Qile0317/Bacteria-Classifier-CNN
A resnet50 bacterial genus/strain classifier from the dibas dataset.
Qile0317/Covid-19-severity-and-Aging
Qile0317/FreqTrie.jl
Implementation of a modified Trie datastructure where duplicate letters posses a "count" that increments when a character matches the current node.
Qile0317/KmerGMA-suppplemental-material
Repository for analysis scripts, data, and general supplemental information for Utställningen Ungaforskare finals 2023
Qile0317/Leetcode
A variety of C++ leetcode solutions
Qile0317/Rosalind-in-R-and-Julia
A collection of Rosalind solutions
Qile0317/scRepertoire
A toolkit for single-cell immune profiling
Qile0317/SimplePdfMerger
A simple pdf merging desktop application
Qile0317/SoFoCompBio22
Updates and analysis scripts for my SoFo project.
Qile0317/bHive
B-cell Hybrid Immune Variant Engine
Qile0317/cv
my cv
Qile0317/espm50ac-fp-fa24
ESPM50AC final project at UC Berkeley, fall 2024
Qile0317/Ibex
Using BCR and expression for sequence embedding
Qile0317/namfinder
Finds Non-overlapping Approximate Matches (NAMs) between query and reference sequences using strobemers
Qile0317/NextGenSeqUtils.jl
NextGenSeqUtils:
Qile0317/notion-widgets
Qile0317/qile0317.github.io
My personal website
Qile0317/SCIPData
A data package for testing the APackOfTheClones package. Contains public 10X Genomics datasets.
Qile0317/SimpleStatTools
A work in progress package to simplify statistical analysis
Qile0317/strobealign
Aligns short reads using dynamic seed size with strobemers
Qile0317/Trex
Using TCR and expression for sequence embedding
Qile0317/UCSD-biopy
scripts I developed for the UCSD bioinformatics course
Qile0317/USACO
USACO
Qile0317/WebBlast.jl