Pinned Repositories
alphafold
Open source code for AlphaFold.
alphamissense
Data_Analysis_with_Python-CourseWork
data analysis with python
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
EGA_Data_submission
Describe steps of data submission to EGA database
FFPEsig
Codes and Data for FFPEsig manuscript
IODS-CourseWork
template for IODS course projects
MachineLearning_MolecularBiology-CourseWork
All you need to know about mutational sigs
MILO
Our method for detecting mutational patterns in shallow sequencing data
PhaseTank
This repository mirrors the tool (PhaseTank) I developed during my MSc
QingliGuo's Repositories
QingliGuo/FFPEsig
Codes and Data for FFPEsig manuscript
QingliGuo/PhaseTank
This repository mirrors the tool (PhaseTank) I developed during my MSc
QingliGuo/MILO
Our method for detecting mutational patterns in shallow sequencing data
QingliGuo/alphafold
Open source code for AlphaFold.
QingliGuo/alphamissense
QingliGuo/Data_Analysis_with_Python-CourseWork
data analysis with python
QingliGuo/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
QingliGuo/EGA_Data_submission
Describe steps of data submission to EGA database
QingliGuo/IODS-CourseWork
template for IODS course projects
QingliGuo/MachineLearning_MolecularBiology-CourseWork
All you need to know about mutational sigs
QingliGuo/SigProfilerMatrixGenerator
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
QingliGuo/Software_installation
This repo will record instructions for software installation on the current cluster I am working on
QingliGuo/TumourOnly_mutSig
Identifying mutational signatures in deep and shallow tumour only samples
QingliGuo/gpt-pilot
Dev tool that writes scalable apps from scratch while the developer oversees the implementation
QingliGuo/hmftools
Various algorithms for analysing genomics data
QingliGuo/nanoGPT
The simplest, fastest repository for training/finetuning medium-sized GPTs.
QingliGuo/shap
A game theoretic approach to explain the output of any machine learning model.
QingliGuo/VCF-liftover
Liftover VCF files
QingliGuo/ydata-profiling
1 Line of code data quality profiling & exploratory data analysis for Pandas and Spark DataFrames.