QuLab-VU

Pinned Repositories

MuSyC_Cell
Language:Python84
EMT_SCLC_project
Language:Jupyter Notebook11
DIP_rate_NatMeth2016
Language:R13
dipDRC
Code for analyzing dose-response curves using DIP rate as the effect metric
Language:R11
AAnet_torch
Language:Jupyter Notebook01
Manuscript-code
Code used in publications
00
AAnet
Archetypal Analysis network (AAnet)
Language:Jupyter Notebook00
SAMap
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
Language:Jupyter Notebook00
sequencing_pipelines
Language:Jupyter Notebook00
Groves-CellSys2022
Code and figures related to Groves et al. submitted to Cell Systems 2021
Language:Jupyter Notebook02

QuLab-VU's Repositories

QuLab-VU/Groves-CellSys2022
Code and figures related to Groves et al. submitted to Cell Systems 2021
Language:Jupyter Notebook2
QuLab-VU/Stauffer_et_al_2024
Language:HTML
QuLab-VU/tempo_code
Repository for code developed for various projects on the Tempo server.
Language:Jupyter Notebook1
QuLab-VU/AAnet_torch
Language:Jupyter Notebook1
QuLab-VU/DIP_rate_NatMeth2016
Language:R13
QuLab-VU/EMT_SCLC_project
Language:Jupyter Notebook11
QuLab-VU/TIPS_Review_2020
Repository for code related to Meyer et al. Trends in Pharmacological Sciences Review
Language:MATLAB
QuLab-VU/musyc-web
Musyc web app
Language:Python1
QuLab-VU/MuSyC_Cell
Language:Python84
QuLab-VU/SAMap
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
QuLab-VU/mazebox
A collection of bioinformatics tools for analyzing single-cell transcriptomics data.
QuLab-VU/COATI
Calcium oscillation analysis tool
Language:Python
QuLab-VU/AAnet
Archetypal Analysis network (AAnet)
QuLab-VU/GES_2021
Code (data analysis and model simulations) for GES paper (2020).
Language:R
QuLab-VU/RT-Glow
Language:HTML
QuLab-VU/NotchDynamics_SCLC
Language:Jupyter Notebook
QuLab-VU/BooleanModel_SOCE
This repository contains the pipelines to simulate the boolean network for SOCE/BRAFi network.
Language:Python1
QuLab-VU/YAP-TAZ-Model
Language:Jupyter Notebook
QuLab-VU/Notch_model_SCLC
Language:Python
QuLab-VU/sequencing_pipelines
QuLab-VU/dipDRC
Code for analyzing dose-response curves using DIP rate as the effect metric
Language:R11
QuLab-VU/SCLC-Cancer-Cell-Manuscript
QuLab-VU/FootprintMethods_on_scRNAseq
Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
QuLab-VU/practice_repo
Just a repo to play with for learning how to use git
Language:R
QuLab-VU/QuLab-VU.github.io
Public GitHub Pages site for The Quaranta Lab at Vanderbilt University
Language:HTML1
QuLab-VU/Segmentation-Matlab
Language:Matlab
QuLab-VU/Manuscript-code
Code used in publications