QuackenbushLab

Pinned Repositories

cobra-experiments
Language:R4 4 00
FENRIR
RNA-seq pipeline to detect viral reads
Language:Shell7 4 02
grand
GRAND database of gene regulatory networks.
Language:JavaScript4 5 72
matlab-panda
MATLAB implementation of PANDA & LIONESS algorithms
Language:MATLAB4 6 13
neural_ODE
project: replacing the use of RNNs in gene-regulatory network prediction, with ODEs.
Language:Python2 6 03
normFigures
Scripts to preprocess entire GTEx dataset and produce all rough figures
Language:R2 5 02
pandaR
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/pandaR.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=pandaR.
Language:R4 4 02
phoenix
PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics
Language:Python12 3 12
pypanda
Python implementation of PANDA and LIONESS
Language:Python6 6 08
yarn
YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization
Language:R13 3 52

QuackenbushLab's Repositories

QuackenbushLab/yarn
YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization
Language:R13 3 52
QuackenbushLab/phoenix
PHOENIX: a tool to infer biologically informed NeuralODEs describing genome-wide regulatory dynamics
Language:Python12 3 12
QuackenbushLab/FENRIR
RNA-seq pipeline to detect viral reads
Language:Shell7 4 02
QuackenbushLab/pypanda
Python implementation of PANDA and LIONESS
Language:Python6 6 08
QuackenbushLab/cobra-experiments
Language:R4 4 00
QuackenbushLab/grand
GRAND database of gene regulatory networks.
Language:JavaScript4 5 72
QuackenbushLab/matlab-panda
MATLAB implementation of PANDA & LIONESS algorithms
Language:MATLAB4 6 13
QuackenbushLab/pandaR
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/pandaR.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=pandaR.
Language:R4 4 02
QuackenbushLab/MONSTER
Language:R2 6 02
QuackenbushLab/neural_ODE
project: replacing the use of RNNs in gene-regulatory network prediction, with ODEs.
Language:Python2 6 03
QuackenbushLab/normFigures
Scripts to preprocess entire GTEx dataset and produce all rough figures
Language:R2 5 02
QuackenbushLab/DASH
DASH (Domain Aware Sparsity Heuristic) is a neural network pruning strategy that leverages domain-knowledge to obtain *meaningfully sparse* models.
Language:Python1 4 00
QuackenbushLab/devbrim
Modify bipartite modularity maximization algorithm
Language:R0 14 00
QuackenbushLab/gpuzoo
Benchmarks of the gpuZoo implementations.
Language:MATLAB5 0