RECETOX/recetox-aplcms

Issues

• Feature align - multiple peaks undefined behaviour

  #144 opened 4 months ago by xtrojak
  0

• Update retention time correction step

  #209 opened 4 months ago by hechth
  1

• uodate eic denoising to consider big gaps in rt

  #218 opened 4 months ago by hechth
  0

• Ensure the tool also works with all formats compatible with mzR

  #185 opened 7 months ago by hechth
  3

• normix: implement unit test

  #217 opened 7 months ago by hechth
  0

• Implement rawRR backend to read data from raw files

  #186 opened 2 years ago by hechth
  0

• Use peak shape parameters for feature clustering and alignment

  #215 opened a year ago by hechth
  0

• Include peak shape parameters in aligned feature table

  #214 opened a year ago by hechth
  0

• Improve hybrid test cases

  #132 opened 2 years ago by hechth
  0

• Remove `_intensity` suffix in the intensity and `_rt` suffix in the rt table

  #211 opened a year ago by hechth
  0

• fix peak picking corner case when an EIC has between 2 and 10 features

  #204 opened a year ago by hechth
  1

• Implement new `join` based peak alignment

  #210 opened a year ago by hechth
  0

• release v0.11.0

  #207 opened 2 years ago by hechth
  0

• update test data for extract-features full data test case

  #199 opened 2 years ago by hechth
  0

• implement new way of clustering

  #198 opened 2 years ago by hechth
  1

• Update CI action to use node16

  #205 opened 2 years ago by hechth
  0

• test issue

  #202 opened 2 years ago by hechth
  0

• noise removal fails on single eic mzml

  #192 opened 2 years ago by hechth
  0

• Tests cleanup

  #126 opened 2 years ago by hechth
  0

• Update documentation of `baseline_correct`

  #188 opened 2 years ago by hechth
  0

• Remove `baseline_correct` from `adaptive.bin` and `load.data`

  #187 opened 2 years ago by hechth
  0

• Refactor `find.match.R`

  #120 opened 2 years ago by hechth
  0

• Fix CI

  #194 opened 2 years ago by hechth
  0

• Implement codecov CI

  #191 opened 2 years ago by hechth
  0

• Re-implement peak detection module

  #184 opened 2 years ago by hechth
  0

• Refactor `peak.characterize.R`

  #119 opened 2 years ago by hechth
  0

• Introduce parallelism in feature.align

  #179 opened 2 years ago by hechth
  0

• Aligned features do not contain tolerances

  #176 opened 2 years ago by xtrojak
  2

• sample_intensities double length in recover.weaker

  #174 opened 2 years ago by zargham-ahmad
  0

• compute_clusters returns unordered file data

  #175 opened 2 years ago by zargham-ahmad
  0

• Refactor `rm.ridge` function

  #121 opened 2 years ago by hechth
  0

• Missing documentation

  #150 opened 2 years ago by hechth
  0

• Refactor `make.known.table.R`

  #122 opened 2 years ago by hechth
  0

• Release `v0.10.0`

  #159 opened 2 years ago by xtrojak
  0

• Where to supply default arguments

  #162 opened 2 years ago by xtrojak
  0

• Harmonize all parameter names in tests and functions

  #166 opened 2 years ago by xtrojak
  0

• Update documentation on usage -> individual steps / unsupervised / hybrid

  #163 opened 2 years ago by xtrojak
  0

• Remove renaming of variables `rt` and `pos` in the code

  #118 opened 2 years ago by hechth
  0

• Make sure @example works

  #161 opened 2 years ago by xtrojak
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• Use `get_num_workers` function in all test cases

  #135 opened 2 years ago by hechth
  0

• Replace `pos` in `adjust.time` with `rt`

  #140 opened 2 years ago by hechth
  0

• Adapt tests to new variables names

  #117 opened 2 years ago by hechth
  0

• Use tibbles in `create_aligned_feature_table` and subsequent function calls.

  #123 opened 2 years ago by hechth
  0

• Extract `compute_clusters` part from `adjust.time` and `feature.align`

  #129 opened 2 years ago by hechth
  0

• Adapt `recover.weaker` to `rt` colname

  #138 opened 2 years ago by hechth
  0

• Return tibble from `proc.cdf`

  #136 opened 2 years ago by hechth
  0

• Replace `label` with `rt` in `adaptive.bin`

  #139 opened 2 years ago by hechth
  0

• Replace `intensities` with `intensity`

  #141 opened 2 years ago by hechth
  0

• Implement hybrid test case on the shortened data.

  #130 opened 2 years ago by hechth
  0

• Check all test case parameters whether they actually match with function parameters

  #127 opened 2 years ago by hechth
  0