RENCI/CellCycleBrowser

Issues

• Automatic phase demarcation

  #33 opened 7 years ago by davidborland
  0

• Manual phase demarcation

  #32 opened 7 years ago by davidborland
  0

• Create "Processing data" popup whenever extensive processing on client side

  #22 opened 7 years ago by davidborland
  2

• Tutorial Images

  #1 opened 7 years ago by davidborland
  26

• Rescaled versus raw values as default? Maybe uploader could specify what default is in meta-data?

  #7 opened 7 years ago by davidborland
  1

• Add species and expression level input on SBML model creation pop up dialog when creating guest workspace

  #31 opened 7 years ago by hyi
  0

• Simulations seem too noisy. Fixing this requires changing model initial conditions and parameters.

  #5 opened 7 years ago by davidborland
  1

• Phase-aware stretching

  #30 opened 7 years ago by davidborland
  0

• Make each section scrollable individually

  #29 opened 7 years ago by davidborland
  0

• Add guest temporary session to provide a playground for users

  #17 opened 7 years ago by hyi
  2

• Create page of list of all data sets and all models and allow for download of all datasets and models in a zipped bundle

  #28 opened 7 years ago by hyi
  1

• Move dataset download button to within each dataset metadata page

  #27 opened 7 years ago by hyi
  1

• Add dropdown for fit type

  #24 opened 7 years ago by davidborland
  1

• Search for "phaseclassification" string to treat as phase track

  #26 opened 7 years ago by davidborland
  1

• Fix bug with downloading SVG when >1 Flow Cytometry plots

  #25 opened 7 years ago by davidborland
  1

• Add global track controls for clear trace selections, rescale all, collapse all, etc.

  #23 opened 7 years ago by davidborland
  0

• Add model fit display

  #21 opened 7 years ago by davidborland
  1

• Hierarchical clustering/dendrogram

  #20 opened 7 years ago by davidborland
  1

• Linked browser/time series trace highlighting

  #18 opened 7 years ago by davidborland
  1

• Select all cell features at once

  #16 opened 7 years ago by davidborland
  1

• Add model simulation progress indicator to report on sub-phase progression

  #14 opened 7 years ago by hyi
  1

• Data processing performance

  #19 opened 7 years ago by davidborland
  0

• Fix flow cytometry density color

  #15 opened 7 years ago by davidborland
  1

• Show cell names

  #13 opened 7 years ago by davidborland
  1

• Add ability to save images

  #12 opened 7 years ago by davidborland
  1

• Add ability for user to add a species to model

  #9 opened 7 years ago by davidborland
  2

• More PUCCI data to come. Under various conditions.

  #10 opened 7 years ago by davidborland
  0

• Perturbations as separate tracks

  #11 opened 7 years ago by davidborland
  0

• It might be convenience to be able to the select the same cell across different features.

  #8 opened 7 years ago by davidborland
  0

• Should we include a FAQ?

  #6 opened 7 years ago by davidborland
  0

• Link to CycleBase

  #3 opened 7 years ago by davidborland
  0

• Can we view 2 flow cytometry plots side by side or tabbed?

  #4 opened 7 years ago by davidborland
  0

• Add an “exercise for students” to the tutorial

  #2 opened 7 years ago by davidborland
  0