RILAB

Pinned Repositories

foRward
A C++11/Rcpp package for forward-time population-genetic simulation
Language:C++2 3 00
historical_genomics
maize historical genomics
Language:R5 8 04
lab-docs
The Ross-Ibarra's lab documentation
Language:HTML26 21 105
mop
Simple tool for capturing alignment regions with sufficient quality for genotyping.
Language:Python22 5 53
paap
PAAP — preprocessing and alignment pipeline using Slurm array jobs
Language:Python3 4 04
PGRP
Language:TeX2 28 00
PHS_statistic
code to calculate pairwise haplotype statistic
Language:Perl1 4 01
Plant3G
Plant GWA (genome-wide analysis), GEP (genomic-enable prediction) and GE (genome evolution) toolset
Language:Python4 7 02
statements
Successful Job Applications and Grants
676 68 1127
synthetic_load
Language:Shell1 4 00

RILAB's Repositories

RILAB/statements
Successful Job Applications and Grants
676 68 1127
RILAB/lab-docs
The Ross-Ibarra's lab documentation
Language:HTML26 21 105
RILAB/mop
Simple tool for capturing alignment regions with sufficient quality for genotyping.
Language:Python22 5 53
RILAB/historical_genomics
maize historical genomics
Language:R5 8 04
RILAB/Plant3G
Plant GWA (genome-wide analysis), GEP (genomic-enable prediction) and GE (genome evolution) toolset
Language:Python4 7 02
RILAB/AJB_MutationalTargetSize_GenomeSize
Language:HTML1 7 00
RILAB/methylation
Language:HTML1 24 01
RILAB/PHS_statistic
code to calculate pairwise haplotype statistic
Language:Perl1 4 01
RILAB/rilab.github.io
Ross-Ibarra Lab at UC Davis
Language:HTML1 7 08
RILAB/synthetic_load
Language:Shell1 4 00
RILAB/peachy
peach & almond domestication
Language:TeX0 24 00
RILAB/beissinger_ms
Language:TeX24 0
RILAB/BGS_demo
Language:TeX3 0
RILAB/BGS_sims
Simulation of background selection in non equilibrium populations
Language:HTML4 01
RILAB/bis101
bis101
Language:R3 0
RILAB/bneck
Language:C++3 0
RILAB/discoal
discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples
Language:TeX2 0
RILAB/fruitcase
Language:TeX4 1
RILAB/fwdpy11
Forward-time simulation in Python using fwdpp
Language:C++4 0
RILAB/hardyweinberg
Code associated with Schraiber et al (2012), Genetics
Language:R3 0
RILAB/IAmSam
forward simulation of indel associated mutation model
Language:C++3 0
RILAB/Maize-Teo-Scripts
Language:R3 0
RILAB/NSF_PRFB_PlantGenome
Application for NSF Post-doc fellowship
Language:TeX3 01
RILAB/pdf2pdf
does the magical pdf-to-pdf conversion popular in academic journal submission sites
Language:Shell3 0
RILAB/Policies
Lab policies and operating procedures
3 0
RILAB/ProgenyArray
An R package to work with half-sib progeny array data
Language:R3 0
RILAB/rilab_template
Language:TeX3 0
RILAB/rmin_cut
Slice a sequence based on 4-gamete test
Language:Perl3 02
RILAB/tasselr
Some beta interfaces to Tassel's GBS data on HDF5
Language:R3 0
RILAB/ZeaBigData.github.io
web site of zea big data
Language:CSS3 0