RJ3
Principal Research Scientist @ MIT CompBio/Bioinformatics/SequenceAnalysis
MIT Lincoln LaboratoryCambridge, MA
Pinned Repositories
KairoSight
Python based software to analyze scientific images across time.
alphafold_singularity
Singularity recipe for AlphaFold
AndorSifReader
Python wrapper for Andor SIFReaderSDK. Library can be used to read spectrums measured by Andor spectrographs. Requires dlls from SIFReaderSDK.
android_device_samsung_tuna
camat
A GUI based program to rapidly analyze optical mapping data (Calcium and Voltage)
ORCA
Tool for measuring conduction velocity from isochrones.
PosnackLabFigures
Python scripts to create figures from lab data for presentations, publication, etc.
processMaps
Python functions to process cardiac electrophysiology mapping data
Rhythm
GUI Rhythm
stackin
Load-in your stacks.
RJ3's Repositories
RJ3/camat
A GUI based program to rapidly analyze optical mapping data (Calcium and Voltage)
RJ3/processMaps
Python functions to process cardiac electrophysiology mapping data
RJ3/ORCA
Tool for measuring conduction velocity from isochrones.
RJ3/PosnackLabFigures
Python scripts to create figures from lab data for presentations, publication, etc.
RJ3/Rhythm
GUI Rhythm
RJ3/stackin
Load-in your stacks.
RJ3/alphafold_singularity
Singularity recipe for AlphaFold
RJ3/AndorSifReader
Python wrapper for Andor SIFReaderSDK. Library can be used to read spectrums measured by Andor spectrographs. Requires dlls from SIFReaderSDK.
RJ3/android_device_samsung_tuna
RJ3/asanawarrior
The only Asana command line interface you'll ever need.
RJ3/BatchSpoolConvert
This Andor BASIC program converts a directory of spooled .sifx files from the Andor Zyla sCMOS to regular Andor .sif files.
RJ3/CamPy
A continuation of the infamous Camat, ported over to Python from scratch.
RJ3/docker-images
Docker image files
RJ3/drill
Mirror of Apache Drill
RJ3/HADDOCKer
Docker image for the running the HADDOCK system for predicting the structure of biomolecular complexes.
RJ3/heartspec
heartspec is a project focused on deconvolving mitochondrial absorbance spectrum to assess metabolic activity.
RJ3/KairoSight
A python GUI to load and analyze biological videos
RJ3/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
RJ3/presto-rest
RJ3/Rhythm-1.2
multiparametric imaging