Bed Export example feature end -1 correct ?
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Not quite sure if this is intended, but if i got everything correct the genomic sites of the Interaction file are supposed to be GTF like. If so, counting starts with 1 and the end feature is inclusive in the interval. In contrast bed starts with 0 so -1 for the feature start should be correct, However the example also has -1 on the end of the feature, but bed feature ends are non-inclusive so it should stay the same if i got everything correctly.
If this is intended we might consider adding information about the intervals in the README
Yeah, you are absolutely right. That was was copy/paste error on my part. I changed that it to non-inclusive in the README. Also double checked my implementation and that should be resolved now.