rna
There are 427 repositories under rna topic.
a-r-j/graphein
Protein Graph Library
nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Lattice-Automation/seqviz
a JavaScript DNA, RNA, and protein sequence viewer
tseemann/barrnap
:microscope: :leo: Bacterial ribosomal RNA predictor
nextstrain/nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
PacificBiosciences/IsoSeq
Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
fjossinet/RNArtist
With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...
mmagnus/rna-tools
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
nf-core/rnafusion
RNA-seq analysis pipeline for detection of gene-fusions
GoekeLab/xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
bgruening/galaxytools
:microscope::books: Galaxy Tool wrappers
jaswindersingh2/SPOT-RNA
RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.
ga4gh/ga4gh-server
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
mozack/abra2
ABRA2
Lattice-Automation/seqfold
nucleic acid folding
lbcb-sci/RiNALMo
RiboNucleic Acid (RNA) Language Model
r2dt-bio/R2DT
Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
nf-core/hlatyping
Precision HLA typing from next-generation sequencing data
genome/bfx-workshop
A course on genomics and bioinformatics from WU
KirillKryukov/naf
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
adnaniazi/tailfindr
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
yikunpku/RNA-MSM
Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding and attention map to match different types of downstream tasks.
1ytic/warp-rna
Recurrent Neural Aligner
nf-core/rnasplice
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
BackofenLab/IntaRNA
Efficient target prediction incorporating accessibility of interaction sites
srnas/barnaba
Analyse Nucleic Acids Structure and Simulations with baRNAba
bgruening/galaxy-rna-workbench
Galaxy RNA workbench
nf-core/rnavar
gatk4 RNA variant calling pipeline
BackofenLab/RNA-Playground
Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
comprna/CHEUI
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
UMCUGenetics/RNASeq
RNASeq pipeline
nf-core/lncpipe
UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
RNAcentral/rnacentral-webcode
RNAcentral website source code
chenkenbio/SpliceBERT
Primary RNA sequence model
nf-core/isoseq
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
n-szulc/fingeRNAt
Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.