GoekeLab/xpore

Issues

• Inquiry about the result interpretation and m6A level

  #229 opened 3 months ago by kwonej0617
  1

• Run wiith only one sample

  #230 opened 3 months ago by Seongmin-Jang-1165
  1

• Nanopolish "eventalign" command not completing in time limit.

  #228 opened 3 months ago by baibhav-bioinfo
  1

• Question about datarep

  #226 opened 4 months ago by cent0134
  2

• error in xpore diffmod step

  #227 opened 4 months ago by mariachiaragrieco
  0

• empty output files in dataprep stage

  #214 opened 10 months ago by villegmb
  6

• RNA004 Inverted DRACH Results

  #225 opened 6 months ago by BrendanBeahan
  1

• dataprep error and empty output files

  #170 opened 6 months ago by Michael-m6A
  27

• Request for xpore result of HEK293T-rep2

  #160 opened 6 months ago by kwonej0617
  20

• dataprep high coverage sample

  #162 opened 6 months ago by rania-o
  6

• Question about xpore and Motif Output

  #220 opened 6 months ago by niujiale
  1

• about Homo_sapiens.GRCh38.cdna.ncrna_wtChrIs_modified

  #167 opened 6 months ago by rezarahman12
  0

• The scope of application of the xpore

  #178 opened 6 months ago by zzf77
  1

• enquire about interpretation of diff_mod rate column

  #221 opened 6 months ago by g-s-2018
  2

• error in datapre step

  #184 opened 6 months ago by huawen-poppy
  7

• DataPrep error and empty output files

  #222 opened 6 months ago by cent0134
  2

• question about the modification category

  #223 opened 6 months ago by huawen-poppy
  2

• Can Xpore detect RNA modification other than m6A?

  #181 opened 2 years ago by fulaibaowang
  3

• error in xpore diffmod

  #219 opened 7 months ago by lyj95618
  2

• KeyError: exon in xpore dataprep

  #217 opened 8 months ago by mumdark
  4

• version number needs to be updated

  #218 opened 8 months ago by nickst85
  1

• Eventalign.index from m6anet output and RNA004 compatibility

  #215 opened 10 months ago by rugilemat
  9

• diffmod error

  #216 opened 9 months ago by rugilemat
  4

• Biological replicate

  #213 opened 10 months ago by AndreaYCT
  4

• xpore dataprep empty output files

  #212 opened 10 months ago by linyan168168
  9

• concern about the error in the dataprep step

  #188 opened 10 months ago by lyj95618
  1

• Empty diffmod.table file, only header generated when running xpore diffmod after preprocessing my runs

  #209 opened 10 months ago by nickst85
  5

• dataprep empty output files

  #211 opened a year ago by linyan168168
  1

• question about interpreting the NA value in the mod rate column

  #207 opened a year ago by lyj95618
  3

• Performance Warning

  #208 opened a year ago by nickst85
  1

• question about replicates

  #185 opened a year ago by huawen-poppy
  1

• Can Xpore detect 5mC RNA modification

  #189 opened a year ago by keenhl
  2

• diffmod output files empty

  #169 opened a year ago by anaesco
  4

• Diffmode demo problems

  #157 opened a year ago by tele-med
  3

• "SettingWithCopyWarning" then xpore stops, when running xpore dataprep using the demo dataset....

  #163 opened a year ago by sbridgett
  1

• diffmod.table missing majority of positions

  #180 opened 2 years ago by JannesSP
  5

• Concern about the P value!

  #186 opened a year ago by M-Chi-1
  1

• per-read modification scores or assignments for each position

  #183 opened a year ago by adalisan
  0

• Three questions about xpore

  #182 opened 2 years ago by iamwjy1
  0

• running into problem with Xpore after merging multiple .fastq and .bam files from same Nanopore run

  #179 opened 2 years ago by annapopova-scripps
  7

• Empty diffmod.table file, only header generated when running xpore diffmod with preprocessed files, not able to reproduce the data

  #177 opened 2 years ago by kwonej0617
  7

• Request for xpore result of HEK293T-rep1

  #165 opened 2 years ago by rezarahman12
  2

• diffmod.table and eventalign.index contain only header

  #172 opened 2 years ago by dietvin
  4

• Which of criteria use for get the top significant 1,452 positions?

  #171 opened 2 years ago by thadasps
  0

• HEK293T data fast5 untar problem

  #158 opened 2 years ago by rezarahman12
  1

• output of diffmod and xpore post processing

  #168 opened 2 years ago by rezarahman12
  4

• Diffmod and yml file outcome issue

  #166 opened 2 years ago by Michael-m6A
  3

• diffmod running problem

  #161 opened 2 years ago by rezarahman12
  2

• eventalignment and bas fast5 file

  #159 opened 2 years ago by rezarahman12
  3

• xpore dataprep indexing error: PerformanceWarning: indexing past lexsort depth may impact performance.

  #156 opened 2 years ago by kwonej0617
  3