Pinned Repositories
awesome-nanopore
A curated list of awesome nanopore analysis tools.
bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
bambu-singlecell-spatial
Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu
bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
m6anet
Detection of m6A from direct RNA-Seq data
NanoporeRNASeq
Nanopore RNASeq data
nanoseq
Nanopore demultiplexing, QC and alignment pipeline
proActiv
Estimation of Promoter Activity from RNA-Seq data
sg-nex-data
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
Göke Lab's Repositories
GoekeLab/bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
GoekeLab/awesome-nanopore
A curated list of awesome nanopore analysis tools.
GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
GoekeLab/xpore
Identification of differential RNA modifications from nanopore direct RNA sequencing
GoekeLab/sg-nex-data
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
GoekeLab/m6anet
Detection of m6A from direct RNA-Seq data
GoekeLab/proActiv
Estimation of Promoter Activity from RNA-Seq data
GoekeLab/NanoporeRNASeq
Nanopore RNASeq data
GoekeLab/bambu-singlecell-spatial
Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu
GoekeLab/nanoseq
Nanopore demultiplexing, QC and alignment pipeline
GoekeLab/containers
Bioinformatics containers
GoekeLab/ICGC_alternative_promoters
A pipeline for alternative promoter analysis.
GoekeLab/ncNAT_promoter_switch_code
GoekeLab/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
GoekeLab/nanorna-bam
Downstream analysis of Nanopore RNA data - transcriptome reconstruction and feature counts (under development)
GoekeLab/proactivWorkflow
proActiv workflow: Identifying active and alternative promoters from RNA-Seq data