rezarahman12

Pinned Repositories

pycoQC
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
Language:Python247 5 9739
CHEUI
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
Language:C++30 12 382
SUPPA
SUPPA: Fast quantification of splicing and differential splicing
Language:Python247 15 17460
slow5tools
Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
Language:C91 7 405
nanopolish
Signal-level algorithms for MinION data
Language:C++548 37 1k160
EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
Language:R391 13 12579
pleiofdr
Pleiotropy-informed conditional and conjunctional false discovery rate
Language:Jupyter Notebook22 26 206
python-fastq-downloader
A guide on how to find and download raw RNA-seq data from GEO. Batch download FASTQ files using a Python script and the NCBI SRA tools prefetch and fastq-dump.
Language:Python00
rmats-turbo
Language:C++208 16 34348
rmats2sashimiplot
Language:Python124 10 10453

rezarahman12/python-fastq-downloader
A guide on how to find and download raw RNA-seq data from GEO. Batch download FASTQ files using a Python script and the NCBI SRA tools prefetch and fastq-dump.
Language:Python00