jts/nanopolish

Issues

• nanopolish call-methylation showing Segmentation fault (core dumped)

  #1152 opened a month ago by shakti83kumar
  4

• poly A will not open Bam file

  #1143 opened 5 months ago by jayradke
  1

• nanopolish eventalign taking to much time to finish...

  #1149 opened 2 months ago by baibhav-bioinfo
  1

• nanopolish eventalign slow processing speed

  #1148 opened 2 months ago by vetmohit89
  1

• some issues about nanopolish polyA module

  #1151 opened 2 months ago by lopp1Y
  0

• Does nanopolish polya support cDNA sequencing? "noregion" problem

  #1150 opened 2 months ago by Xing-2024
  2

• Obtaining TSV output with R10.4

  #1146 opened 3 months ago by psorigue
  1

• Segmentation fault in nanopolish eventalign

  #1141 opened 8 months ago by lyj95618
  1

• Does Nanopolish still not support R10.4.1 for methylation analysis

  #1147 opened 3 months ago by Taylorain
  2

• Nanopolish calling methyaltion

  #1145 opened 4 months ago by xyy-xiao
  1

• Clarification on R10.4 and polya

  #1144 opened 4 months ago by bnpapas
  3

• cannot find shared library (libhdf5.so.10)

  #1142 opened 5 months ago by claudiacarter
  0

• Running 5 hours with the empty error.txt and empty .vcf output files.

  #1126 opened 9 months ago by JWang52md
  2

• Problem with eventalign

  #1128 opened 9 months ago by MarioRinBarr
  3

• Nanopolish Call-methylation error

  #1133 opened 9 months ago by bebert30
  1

• Nanopolish with pod5 files

  #1129 opened 9 months ago by DIPLOMICS-SA
  4

• Docker Build Error

  #1131 opened 9 months ago by tutkuiince
  1

• Reads number of nanopolish output

  #1132 opened 9 months ago by guangzhaocs
  2

• frequency of each variant per sample

  #1137 opened 9 months ago by emilydolivo97
  3

• can nanopolish work without a genome alignment?

  #1134 opened 9 months ago by haannguyen
  2

• nanopolish variants vs freebayes

  #1135 opened 9 months ago by emilydolivo97
  1

• nanopolish with fastq

  #1138 opened 9 months ago by mocherry
  3

• does nanpolish work with RNA004

  #1139 opened 9 months ago by mocherry
  5

• After basecallling with dorado, nanopolish was unable to recognize methylation information

  #1140 opened 9 months ago by happier21
  7

• Nanopolish polyA on RNA004 data

  #1136 opened 9 months ago by rugilemat
  2

• nanopolish with fastq

  #1130 opened 9 months ago by mocherry
  0

• A nanopolish version v0.14.1?

  #1127 opened 10 months ago by hasindu2008
  0

• Where can I find bisulfite data?

  #1119 opened a year ago by fengyilin118
  1

• nanopolish polya outputting NO FILE LOADED

  #1118 opened a year ago by glf20
  6

• A few questions about using nanopolish to estimate poly(A) tail length

  #1125 opened a year ago by lopp1Y
  1

• Make quits halfway without the nanopolish executable

  #1124 opened a year ago by ZachChua
  3

• How does call-methylation work?

  #1120 opened a year ago by isnmn
  3

• methylated_frequency is 1.000 only

  #1123 opened a year ago by sachingadakh
  4

• Error installing dependencies?

  #1122 opened a year ago by ZachChua
  2

• Install fails because of HDF5 file

  #1121 opened a year ago by jayradke
  9

• Compare the nanopolish methyaltion output with bismark output to analysis the correlation

  #1114 opened a year ago by Modernism-01
  1

• Nanopolish Variants Using Low Proportion Of Reads

  #1117 opened a year ago by seanmsjkim
  0

• pod5 to fast5 and nanopolish call-methylation no reult

  #1116 opened a year ago by fhy1203
  4

• Weird binary output in tsv from methylation calling

  #1108 opened a year ago by sachingadakh
  0

• Do I need to convert U to T for nanopore direct RNA m6A analysis

  #1115 opened a year ago by wuy24
  2

• Nanopolish call-methylation Processing Speed

  #1113 opened a year ago by Azjer2014
  2

• nanopolish polya with guppy 6.0.6

  #1112 opened a year ago by sunsetyerin
  1

• could not find path to FAST5 for read

  #1111 opened a year ago by mumdark
  6

• duplex and nanopolish still make sense after assembly ?

  #1110 opened a year ago by DelphIONe
  1

• Better intuition for the meaning of QUAL

  #1109 opened a year ago by smsaladi
  2

• Is it feasible to combine runs basecalled with different models?

  #1107 opened a year ago by weishwu
  2

• creating bam files for 6mA and 4mC

  #1106 opened a year ago by Qvdauwer
  1

• question about multiple runs

  #1105 opened a year ago by huawen-poppy
  4

• Indexing Error

  #1104 opened a year ago by Grant-Fox
  0

• The output file of eventaligh is so large and no new information is written when it is 4TB

  #1103 opened a year ago by Dongxu-Zheng
  0