mocherry

Pinned Repositories

salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Language:C++780 38 839164
micro-sam
Segment Anything for Microscopy
Language:Jupyter Notebook373 7 23646
bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Language:R192 7 19724
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Language:Java649 48 1.3k387
ilastik
ilastik-shell, applets, and workflows to string them together.
Language:Python353 40 2k131
nanopolish
Signal-level algorithms for MinION data
Language:C++573 36 1k159
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Language:C1.8k 86 1.1k424
WSL
Issues found on WSL
Language:Python17.7k 567 11k834
SPOT
SPOT - Swift Profiling Of Transcriptomes - a shiny app for gene ranking according to user-defined expression profiles
Language:R0 0 00
dorado
Oxford Nanopore's Basecaller
Language:C++559 31 1.2k68

mocherry/SPOT
SPOT - Swift Profiling Of Transcriptomes - a shiny app for gene ranking according to user-defined expression profiles
Language:R0 0 00