Pinned Repositories
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bioe394e
Introduction to Deep Learning (BioE 394E)
Causal-Inference-and-Discovery-in-Python
Causal Inference and Discovery in Python by Packt Publishing
create_cisTarget_databases
Create cisTarget databases
huawen-poppy.github.io
intro_dgm
"Deep Generative Modeling": Introductory Examples
MachineLearning_notes
Machine learning and deep learning resources
open-problems-multimodal
1st place solution of Kaggle Open Problems - Multimodal Single-Cell Integration
OrthoFinder
Phylogenetic orthology inference for comparative genomics
OT-scOmics
This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in between single-cell omics data.
huawen-poppy's Repositories
huawen-poppy/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
huawen-poppy/bioe394e
Introduction to Deep Learning (BioE 394E)
huawen-poppy/Causal-Inference-and-Discovery-in-Python
Causal Inference and Discovery in Python by Packt Publishing
huawen-poppy/create_cisTarget_databases
Create cisTarget databases
huawen-poppy/huawen-poppy.github.io
huawen-poppy/intro_dgm
"Deep Generative Modeling": Introductory Examples
huawen-poppy/MachineLearning_notes
Machine learning and deep learning resources
huawen-poppy/open-problems-multimodal
1st place solution of Kaggle Open Problems - Multimodal Single-Cell Integration
huawen-poppy/OrthoFinder
Phylogenetic orthology inference for comparative genomics
huawen-poppy/OT-scOmics
This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in between single-cell omics data.
huawen-poppy/SAMap
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
huawen-poppy/SATURN
huawen-poppy/sc-pert
Models and datasets for perturbational single-cell omics
huawen-poppy/scRNA.seq.course
Analysis of single cell RNA-seq data course
huawen-poppy/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
huawen-poppy/stat479-deep-learning-ss19
Course material for STAT 479: Deep Learning (SS 2019) at University Wisconsin-Madison
huawen-poppy/TE_expression_in_scRNAseq
huawen-poppy/tome_code
The scripts used for the analyses in TOME project
huawen-poppy/translatome
huawen-poppy/UCE
UCE is a zero-shot foundation model for single-cell gene expression data