smsaladi

@NeelyxLabszsh

Pinned Repositories

bootcamp
Caltech Introduction to Programming for the Biological Science Bootcamp
Language:Python0 2 00
chimerax_viridis
Colorblind-friendly, perceptually uniform palettes for chimerax
Language:Python11 1 02
codonw-slim
A slimmed down fork of CodonW with python bindings
Language:C8 2 56
genome_size_vs_protein_count
Shiny app that plots NCBI genomes size versus protein count
Language:R6 1 01
heliquest
Drawing helical wheel plots in R, a fork of the HELIQUEST code
Language:R7 3 02
jetfighter
Fix rainbow colormaps before it's too late!
Language:Python8 0 74
phpmyadmin_heroku
Running phpMyAdmin on Heroku
Language:PHP20 5 337
pybioutils
Just some utilities for parsing/working with various biological data files
Language:Python1 1 01
pymol_viridis
Colorblind-friendly, perceptually uniform palettes for pymol
Language:Python19 2 13
tAI
(A Python) tRNA Adaptation Index Calculator
Language:Python4 2 21

smsaladi's Repositories

smsaladi/phpmyadmin_heroku
Running phpMyAdmin on Heroku
Language:PHP20 5 337
smsaladi/pymol_viridis
Colorblind-friendly, perceptually uniform palettes for pymol
Language:Python19 2 13
smsaladi/chimerax_viridis
Colorblind-friendly, perceptually uniform palettes for chimerax
Language:Python11 1 02
smsaladi/codonw-slim
A slimmed down fork of CodonW with python bindings
Language:C8 2 56
smsaladi/jetfighter
Fix rainbow colormaps before it's too late!
Language:Python8 0 74
smsaladi/codon-harmonizer
A different take on codon optimization
Language:Python4 2 11
smsaladi/tAI
(A Python) tRNA Adaptation Index Calculator
Language:Python4 2 21
smsaladi/structure_scales
structures need scales!
Language:Python3 2 0
smsaladi/vmd_viridis
Colorblind-friendly, perceptually uniform palettes for vmd
Language:Tcl3 1 0
smsaladi/digest-preprints
Reserves (biorixv) preprints in an easy-to-work-with format
Language:Python1 4 11
smsaladi/ProDA
A Protein Domain aligner, e.g. MSAs with repeats and rearrangements (A fork)
Language:C++1 2 0
smsaladi/promals
This is a fork of PROMALS3D
Language:C1 2 0
smsaladi/bebi103
Utilities for BE/Bi 103
Language:Python2 0
smsaladi/disembl
fork of DisEMBL (http://dis.embl.de/)
Language:Roff4 41
smsaladi/EASTdb
Language:JavaScript2 4
smsaladi/eca-bioinf-handbook
Lecture notes/book in progress on computing for conservation genomics
Language:TeX0 0
smsaladi/gitignore
A collection of useful .gitignore templates
1 0
smsaladi/medplum
Medplum is a healthcare platform that helps you quickly develop high-quality compliant applications.
Language:TypeScript0 0
smsaladi/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
Language:C++1 0
smsaladi/moltemplate
A general cross-platform tool for preparing simulations of molecules and complex molecular assemblies
Language:Python1 0
smsaladi/multi-barcode-scanner-js_demo
Language:TypeScript1 0
smsaladi/pander
An R Pandoc Writer: Convert arbitrary R objects into markdown
Language:R0 0
smsaladi/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
Language:Perl1 0
smsaladi/pyRONN
fork of RONN 3.2
Language:C++2 1
smsaladi/ranklib-correlation
Implementing correlation metrics for Ranklib
Language:Java2 0
smsaladi/relion
Image-processing software for cryo-electron microscopy
Language:C++1 0
smsaladi/resmap
Compute the local resolution of 3D density maps
Language:Python1 0
smsaladi/RespiCov-analyze
Jupyter notebook analyzing nanopore sequencing data according to the RespiCov paper
Language:Jupyter Notebook0 0
smsaladi/sgidspace
Language:Python1 0
smsaladi/trust-ecrs
Find trusted ECRs for peer review
Language:HTML2 3