hasindu2008/slow5tools

Issues

• f2s_child_worker::ERROR:Bad fast5:Fast5 file '***.fast5' could not be opened or is corrupted

  #139 opened a month ago by hanyishui0612
  6

• slow5tools f2s:Weird or ancient fast5:coverting the attribute Read for consitency.This warning is suppressed now onwards

  #138 opened a month ago by hanyishui0612
  7

• Slow5tools merge failed

  #135 opened 2 months ago by NStrowbridge
  5

• slow5tools degrade (1.3.0) does not detect ULK kit?

  #134 opened 3 months ago by jelber2
  5

• Setting custom prefix is ignored during install

  #124 opened 4 months ago by ForrestCKoch
  2

• f2s error:[add_aux_slow5_attribute::ERROR]

  #128 opened 3 months ago by peiyihe
  4

• Error concerning conflict of run-ids in multi-fast5 file

  #117 opened 5 months ago by sachingadakh
  6

• Problem merging files

  #115 opened 6 months ago by MarioRinBarr
  3

• Error in slow5tools merge

  #112 opened 6 months ago by lyj95618
  4

• Error in slow5tools get

  #113 opened 6 months ago by loganylchen
  13

• Ensuring File Integrity and Accuracy in Processing Custom Genome blow5 Files

  #111 opened 6 months ago by KDalcin
  5

• Could not create read group in fast5 file

  #109 opened 6 months ago by Theo-Nelson
  6

• Bad fast5: Attribute Raw/tracked_scaling_scale

  #106 opened 6 months ago by nickst85
  9

• Add 'header' only output as option in 'View' function

  #114 opened 7 months ago by alegione
  2

• Could not create read group

  #108 opened 10 months ago by maximilianmordig
  4

• [main_samview] fail to read the header from "test_example.slow5".

  #107 opened a year ago by Koeng101
  3

• Error during fast5 conversion: primary data field missing

  #104 opened a year ago by maximilianmordig
  6

• Help with a tricky FAST5

  #103 opened a year ago by hengjwj
  6

• demux pod5s, correct workflow?

  #102 opened a year ago by jorisbalc
  4

• [Error][Improvement] Unhandled error while file writing in a non-permitted directories

  #88 opened a year ago by AnjanaSenanayake
  2

• Compress subset of reads

  #69 opened a year ago by mbhall88
  5

• slow5tools f2s returns different bad reads when run on all single FAST5s vs. when run on an individual folder of single FAST5s

  #99 opened a year ago by hengjwj
  12

• Error encountered during repeated f2s

  #96 opened a year ago by hengjwj
  22

• Error in converting fast5 to slow5

  #91 opened a year ago by dsaha0295
  3

• Malformed blow5 record - can they still be merged?

  #95 opened a year ago by hengjwj
  8

• Playback error

  #92 opened 2 years ago by jennieli421
  13

• Errors when convert fast5 to slow5

  #89 opened 2 years ago by loganylchen
  16

• slow5 files indexing problem in f5c

  #90 opened 2 years ago by rezarahman12
  17

• Conversion back to fast5 is broken in some cases

  #59 opened 2 years ago by mattloose
  11

• [f2s_child_worker::ERROR] Bad fast5

  #83 opened 2 years ago by MeHelmy
  12

• Bad fast5 attribute pore type

  #85 opened 2 years ago by mbhall88
  10

• memory issue

  #84 opened 2 years ago by svennd
  9

• Basecall with Guppy

  #82 opened 2 years ago by SziKayLeung
  11

• Bad fast5 - [fast5_attribute_itr::ERROR]

  #81 opened 2 years ago by chilampoon
  5

• Are pA values from slow5tools normalized?

  #79 opened 3 years ago by chilampoon
  2

• run_id issue in certain files

  #54 opened 3 years ago by SAMtoBAM
  11

• SLOW5 files not working with nanopolish polyA

  #78 opened 3 years ago by maximus-sci
  2

• Missing auxiliary field

  #77 opened 3 years ago by chilampoon
  4

• fast5 to blow5 conversion and back to fast5 gives size difference

  #76 opened 3 years ago by thomasguignard
  2

• Option to retain directory structure

  #53 opened 3 years ago by mbhall88
  3

• Allow to keep multiple run_ids when multi-fast5 contains them

  #60 opened 3 years ago by waltergallegog
  4

• Short help not working on s2f

  #52 opened 3 years ago by mbhall88
  2

• data loss

  #70 opened 3 years ago by jrhendrix
  11

• Converting back to fast5 increases size

  #58 opened 3 years ago by DrownedMala
  4

• Header attributes warning

  #55 opened 3 years ago by mbhall88
  14

• BLOW5 file size is larger than FAST5 VBZ compressed

  #27 opened 3 years ago by nextgenusfs
  6

• how to compare fast5 files

  #50 opened 3 years ago by RichardCorbett
  5