Pinned Repositories
FusionSeeker
A gene fusion caller for long-read transcriptome sequencing data.
inspiration4-omics
Scripts run during processing and analysis of Inspiration4 omics data.
intro-bash-conda-git-linux-shell
kingfisher-download
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
long-read-sequencing-pipeline
A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers
LongcellPre
A pipeline for Nanopore single cell isoform quantification in R
m6a-bash
m6a-dnn
SMS-colab
SMS-data
Theo-Nelson's Repositories
Theo-Nelson/long-read-sequencing-pipeline
A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers
Theo-Nelson/SMS-colab
Theo-Nelson/SMS-data
Theo-Nelson/kingfisher-download
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
Theo-Nelson/FusionSeeker
A gene fusion caller for long-read transcriptome sequencing data.
Theo-Nelson/inspiration4-omics
Scripts run during processing and analysis of Inspiration4 omics data.
Theo-Nelson/intro-bash-conda-git-linux-shell
Theo-Nelson/LongcellPre
A pipeline for Nanopore single cell isoform quantification in R
Theo-Nelson/m6a-bash
Theo-Nelson/m6a-dnn
Theo-Nelson/number-of-publicly-available-long-read-samples
Python Script which Extracts the Number of Long-Read Sequencing Samples within the European Nucleotide Archive
Theo-Nelson/pistis
Quality control plotting for long reads
Theo-Nelson/squares
Theo-Nelson/TN-Talks
Theo-Nelson/TranscriptClean
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
Theo-Nelson/wf-single-cell