Teichmann Group
Sarah Teichmann's group at University of Cambridge: Cambridge Stem Cell Institute & Department of Medicine
Cambridge, UK
Pinned Repositories
bbknn
Batch balanced KNN
cellhint
A tool for semi-automatic cell type harmonization and integration
cellphonedb
celltypist
A tool for semi-automatic cell type classification
drug2cell
Gene group activity utility functions for Scanpy
embl-single-cell-course-2016
Material for lecture at the EMBL Single Cell Course 2016
MultiMAP
MultiMAP for integration of single cell multi-omics
scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
SpatialDE
Test genes for Spatial Variation
tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
Teichmann Group's Repositories
Teichlab/scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
Teichlab/celltypist
A tool for semi-automatic cell type classification
Teichlab/SpatialDE
Test genes for Spatial Variation
Teichlab/tracer
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data
Teichlab/cellhint
A tool for semi-automatic cell type harmonization and integration
Teichlab/drug2cell
Gene group activity utility functions for Scanpy
Teichlab/bin2cell
Join subcellular Visium HD bins into cells
Teichlab/bracer
BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
Teichlab/Genes2Genes
Aligning gene expression trajectories of single-cell reference and query systems
Teichlab/cell2tcr
Inference of TCR motifs
Teichlab/sctk
Teichlab/celltypist_wiki
Materials and scripts for building cell type encyclopedia table
Teichlab/limbcellatlas
This repository contains codes used for the human fetal limb cell atlas.
Teichlab/gene2probe
Pipeline for designing custom probes against human genes
Teichlab/TissueTag
Python package to interactively annotate histological images within a jupyter notebook
Teichlab/SKM_ageing_atlas
Teichlab/thymus_spatial_atlas
general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!
Teichlab/ALI_COVID19
Repo with analysis code for the ALI_COVID19 paper
Teichlab/COVID-19_Challenge_Study
Teichlab/snp2cell
cell type specific, trait-associated gene regulation
Teichlab/G2G_notebooks
Analysis notebooks for G2G MS
Teichlab/treg-gut-niches
Data pre-processing and analysis scripts for the article "Immune microniches shape intestinal Treg function"
Teichlab/COVID-19paed
Teichlab/iss_patcher
Approximate missing features from higher dimensionality data neighbours
Teichlab/GeneDistFinder
Alignment tests for reference and query single cell datasets
Teichlab/lung-immune-cell-atlas
This is a folder containing information of the human fetal lung leukocyte atlas
Teichlab/PanGIAtlas
Integration of gut cell atlases
Teichlab/multi-view-atlas
Multi-view objects for annotation and mapping to single-cell atlases
Teichlab/skeletal_dev_atlas
Teichlab/vascular_atlas
Repo with analysis code for the vascular atlas paper