/ALI_COVID19

Repo with analysis code for the ALI_COVID19 paper

Primary LanguageJupyter Notebook

Notebooks used for analysis in ALI-COVID19 paper: https://www.nature.com/articles/s41564-024-01658-1

Download h5ad objects via https://www.covid19cellatlas.org/index.patient.html under the name COVID-19 across age in ALI organoids

Browsing of data objects via cxg: https://www.covid19cellatlas.org/ALI_COVID19/in-vitro/ and https://www.covid19cellatlas.org/ALI_COVID19/in-vivo/

Citation: Woodall, M.N.J., Cujba, AM., Worlock, K.B. et al. Age-specific nasal epithelial responses to SARS-CoV-2 infection. Nat Microbiol 9, 1293–1311 (2024). https://doi.org/10.1038/s41564-024-01658-1

Thanks!