Teichlab/tracer

Issues

• Igblastn error for Human and not for Mouse

  #129 opened 14 days ago by Kfirinb
  0

• IGBLAST stops working with message: WORKER: T4 BATCH # 1 CEXCEPTION: Error pre-fetching sequence data and WORKER: T2 BATCH # 1 CEXCEPTION: Attempt to access NULL pointer.

  #105 opened 4 years ago by jessicagamio
  2

• tracer summarise fails with uninformative error

  #123 opened 9 months ago by svalkiers
  1

• AssertionError during tracer installation

  #122 opened 9 months ago by svalkiers
  6

• Some issues at Trinity Phase 1 about insilico_read_normalization.pl

  #124 opened 9 months ago by lsy5011
  0

• Output CDR3 all is NA

  #121 opened a year ago by RuonanTian
  0

• How to match my TCR sequence reported by TraCer with my 10X Cellranger vdj output Clonalcall?

  #120 opened 2 years ago by MugenQin
  0

• Tracer assemble gives two chains with identical CDR3 sequence as different

  #118 opened 2 years ago by diitaz93
  0

• Running TraCeR on single-cell PacBio data

  #117 opened 2 years ago by ndrubins
  0

• Can tracer skip assemble

  #116 opened 3 years ago by TangLabsysu2020
  1

• Java DISPLAY variable error when running tracer

  #115 opened 3 years ago by tiagobrc
  1

• very low overall alignment rate with bowtie2

  #114 opened 3 years ago by noorisotoudeh
  9

• Newer python versions and Bio Alphabet

  #112 opened 3 years ago by NathanSiemers
  5

• Running tracer on 10x Genomics data

  #111 opened 3 years ago by abiswas97
  1

• OSError: Required binary not found: bowtie2

  #94 opened 3 years ago by gh22333
  5

• Bio.Alphabet has been removed from Biopython

  #103 opened 4 years ago by cramirezs
  5

• Running containerized tracer using singularity

  #109 opened 4 years ago by carlo-deintinis
  4

• a ZeroDivisionError

  #108 opened 4 years ago by zhouxinseeu
  10

• Got an error in Running Kallisto

  #107 opened 4 years ago by zhouxinseeu
  2

• TraCeR integration with R-based tools

  #106 opened 4 years ago by andresnoe
  2

• trinity_kmer_length config option not working

  #102 opened 4 years ago by HumzaHemani
  1

• version of TraCeR in docker container

  #99 opened 4 years ago by orrzor
  4

• TraCeR on 10X cellranegr vdj output filtered_contig.fasta demultiplexed files

  #95 opened 5 years ago by arutik
  8

• KeyError message in assemble

  #90 opened 5 years ago by micans
  5

• question about repertoire coverage/bias

  #98 opened 5 years ago by jfx319
  0

• small test data

  #97 opened 5 years ago by wangjiawen2013
  1

• Tracer clonotype network output

  #91 opened 5 years ago by Meng0625
  3

• questions about input file and <cell_name> parameter

  #93 opened 5 years ago by AlfredShawn
  1

• calling a deletion in IGK-J with igbalst 1.12.0

  #92 opened 5 years ago by HLAmolec
  8

• Include leader sequences in assembly?

  #88 opened 5 years ago by jfass
  1

• Tracer using Singularity

  #87 opened 5 years ago by tiagobrc
  1

• Running "tracer test -p 1 -c tracer.config" problem with dot

  #86 opened 5 years ago by solyris
  1

• Running docker image with test data fails.

  #66 opened 6 years ago by gitbuckley
  4

• problem understanding tracer output

  #85 opened 5 years ago by hkoohy
  5

• tracer 0.6 test fails in summarise stage:

  #84 opened 5 years ago by hkoohy
  4

• ambiguity in clonotype assignment

  #82 opened 6 years ago by lincoln-harris
  7

• FutureWarning: in the final step of ##Filtering by read count##

  #81 opened 6 years ago by SeadonXing
  0

• Running igblast returns an error

  #70 opened 6 years ago
  5

• issue with build

  #78 opened 6 years ago by mhassan
  14

• Tracer summarise output

  #75 opened 6 years ago by YarsnC
  3

• Improve --loci argument options

  #62 opened 6 years ago by mstubb
  2

• Adding assembled_file option assembly process

  #77 opened 6 years ago by JohnMCMa
  1

• Failed running test with No successful Trinity assemblies

  #76 opened 6 years ago by ruqianl
  5

• Regenerate test output with new CDR3 code

  #74 opened 6 years ago by mstubb
  0

• multiple TCR A/B for same cell?

  #72 opened 6 years ago by lincoln-harris
  1

• Assembly methodology question

  #71 opened 6 years ago by lincoln-harris
  3

• naive question about tracer

  #69 opened 6 years ago by GuidoLeoni
  3

• test data not being reproduced

  #68 opened 6 years ago by robertamezquita
  7

• IgBLAST update in Docker image?

  #67 opened 6 years ago by wyattmcdonnell
  10

• igblastn and igblastp return an error

  #65 opened 6 years ago by comrade1809
  13