Pinned Repositories
2017-June-RNA-Seq-Workshop
2018-May-Microbial-Community-Analysis-Workshop_UCB
2018 May Microbial Community Analysis Workshop @ UCB
apc
(a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
Bioinformatics-Genome-Assembly-and-Analysis-Workshop-Pac-Bio-and-10x-Genomics-
Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016
BWG_References_talk
Talk on reference genomes for summer interns
Cancer_Cell_2022_manuscript_code
Code associated with the Cancer Cell 2022 article "Transcriptomic profiles of neoantigen-reactive T cells in human gastrointestinal cancers" by Chunhong Zheng, et al.
compass
Perl / R scripts to COMPare a DNA sequence ASSembly to a trusted reference sequence
PBcR-testing
framework for testing various strategies related to correction of PacBio reads (via Illumina reads) and subsequent use in assembly
scythe
A 3'-end adapter contaminant trimmer
seqHelpers
various Perl, Python, and other scripts to help manipulate high throughput sequence data
jfass's Repositories
jfass/apc
(a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
jfass/compass
Perl / R scripts to COMPare a DNA sequence ASSembly to a trusted reference sequence
jfass/PBcR-testing
framework for testing various strategies related to correction of PacBio reads (via Illumina reads) and subsequent use in assembly
jfass/scythe
A 3'-end adapter contaminant trimmer
jfass/seqHelpers
various Perl, Python, and other scripts to help manipulate high throughput sequence data
jfass/2017-June-RNA-Seq-Workshop
jfass/2018-May-Microbial-Community-Analysis-Workshop_UCB
2018 May Microbial Community Analysis Workshop @ UCB
jfass/Bioinformatics-Genome-Assembly-and-Analysis-Workshop-Pac-Bio-and-10x-Genomics-
Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016
jfass/BWG_References_talk
Talk on reference genomes for summer interns
jfass/Cancer_Cell_2022_manuscript_code
Code associated with the Cancer Cell 2022 article "Transcriptomic profiles of neoantigen-reactive T cells in human gastrointestinal cancers" by Chunhong Zheng, et al.
jfass/mf2dot
Generate dot files from makefiles.
jfass/qmk_firmware
Open-source keyboard firmware for Atmel AVR and Arm USB families
jfass/FuBAR
(Fu)sion (B)reakpoint (A)nalysis and (R)eview - test and review gene fusion events with DNA- and RNA-Seq datasets
jfass/tkk