Issues
- 1
BBKNN for ATAC data
#61 opened by wlason - 2
kernals died when using bbknn
#60 opened by FessenSimon - 2
Update on bioconda
#59 opened by benjamin-james - 1
incompatible with annoy==1.17.0 ?
#44 opened by zktuong - 5
np.matrix and ridge_regression
#58 opened by maryellenlynall - 9
`ImportError` for `scikit_learn` >= 1.0.0
#54 opened by matchy233 - 2
error during ridge_regression
#53 opened by JuliaChristiaanse - 3
- 0
Issues importing bbknn after successful install
#50 opened by ngolan1 - 5
- 2
Performace varied on different operating systems
#47 opened by cquzys - 1
- 1
Export BBKNN results to R software
#45 opened by edroaldo - 4
Does bbknn really work?
#43 opened by HelloWorldLTY - 3
`n_trees` is now `annoy_n_trees`
#41 opened by mukundctx - 1
- 3
problem : name 'logg' is not defined
#42 opened by ahmedibatta - 4
- 4
neighbors_within_batch argument usage in R?
#39 opened by rwelling520 - 0
- 2
- 1
Details for pbmc dataset used #30
#33 opened by mohit1997 - 1
- 0
Collaboration
#17 opened by jumphone - 2
Details for pbmc dataset used
#30 opened by mohit1997 - 1
- 1
umap error after package updates
#28 opened by PaulingLiu - 2
Please also require packaging in setup.py
#27 opened by jenzopr - 10
should change location of 'distances' and 'connectivities' for new versions of anndata
#25 opened by alasla - 1
scanpy update incompatibility
#26 opened by bjstewart1 - 1
- 1
"sklearn" as a dependency
#23 opened by deto - 1
ModuleNotFoundError
#21 opened by mvfki - 1
- 1
Correcting for more than 1 covariate using BBKNN
#18 opened by dnehar - 6
Logging error
#15 opened by ivirshup - 1
- 7
- 3
- 5
Is it possible to identify marker genes?
#8 opened by NikTuzov - 6
error reproducing notebook
#7 opened by ltosti - 1
Any plan on making R package for bbknn?
#6 opened by MJ-Yang - 1
bbknn publication
#5 opened by wangjiawen2013 - 1
bbknn for a subset of the anndata
#4 opened by aopisco - 3
scanorama bbknn
#3 opened by wangjiawen2013 - 4
Standalone function
#1 opened by ilyakorsunsky - 3
edge weights
#2 opened by wangjiawen2013