Pinned Repositories
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
AWS_Tutorial
Short Introduction to using EC2 on AWS
berkeley
The Hacker Within at the University of California - Berkeley
CDIPS_Tutorial_2017
Tutorial on Data Manipulation in Python
dotfiles
My config files
KinaseBinding
Library for some bioinformatics data-manipulation
Miniconda-Install
Install Python packages as stand-alone applications using Miniconda
scTransformPy
A Python implementation of of the scTransform method
Snakemake_Tutorial
A short tutorial on getting started with Snakemake for workflow management
THW_Python_Plotting
Tutorial on plotting in Python
deto's Repositories
deto/Snakemake_Tutorial
A short tutorial on getting started with Snakemake for workflow management
deto/Miniconda-Install
Install Python packages as stand-alone applications using Miniconda
deto/scTransformPy
A Python implementation of of the scTransform method
deto/CDIPS_Tutorial_2017
Tutorial on Data Manipulation in Python
deto/AWS_Tutorial
Short Introduction to using EC2 on AWS
deto/KinaseBinding
Library for some bioinformatics data-manipulation
deto/THW_Python_Plotting
Tutorial on plotting in Python
deto/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
deto/berkeley
The Hacker Within at the University of California - Berkeley
deto/dotfiles
My config files
deto/goatools
Python scripts to find enrichment of GO terms
deto/google-scholar-scraper
Python library for scraping Google Scholar
deto/group-meeting
A Jekyll template (based on holman/left) for a group that has regularly scheduled meetings, one post per date. Genericized from thehackerwithin/template
deto/Hotspot_Analysis
Analysis scripts for writing the Hotspot paper
deto/Proj294
Final project code for CS 294
deto/pyensembl
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
deto/RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
deto/scikit-learn
scikit-learn: machine learning in Python
deto/scVI
Deep generative modeling for single-cell transcriptomics
deto/seaborn
Statistical data visualization using matplotlib
deto/sphinx-template
A template for a fully-functioning sphinx deployment
deto/testing_gitlfs
Testing Git LFS
deto/THGLab
Work for THG Lab
deto/Tutorials
Various Python Tutorials and Talks
deto/vim-ipython
A two-way integration between Vim and IPython 0.11+
deto/YosefDB
A webserver + database for Yosef Group samples