Pinned Repositories
arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
Bootstrap-Analysis-Arriaga-Nature-Cancer-2020
Script of bootstrap analysis of evolution tree used in Juan M Arriaga, et al. A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance. Nature Cancer (2020)
Chek2_scRNAseq
The script used in manuscript "Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade" for scRNAseq data analysis.
MITKats
The Medical Imaging Interaction Toolkit with augmented tools for segmentation (MITKats), an extension of MITK with Threshold Components and Clipping Segmentation features.
pamler
Pegasus
Annotation and Prediction of Oncogenic Gene Fusions in RNAseq
ph_datasets
Persistent Homology Datasets
randomly
A Library for Denoising Single-Cell Data with Random Matrix Theory
scTDA
An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
TOBI
TOBI predicts somatic variants from .vcf or .bam input
RabadanLab's Repositories
RabadanLab/arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
RabadanLab/randomly
A Library for Denoising Single-Cell Data with Random Matrix Theory
RabadanLab/Pegasus
Annotation and Prediction of Oncogenic Gene Fusions in RNAseq
RabadanLab/scTDA
An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
RabadanLab/TOBI
TOBI predicts somatic variants from .vcf or .bam input
RabadanLab/Bootstrap-Analysis-Arriaga-Nature-Cancer-2020
Script of bootstrap analysis of evolution tree used in Juan M Arriaga, et al. A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance. Nature Cancer (2020)
RabadanLab/Chek2_scRNAseq
The script used in manuscript "Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade" for scRNAseq data analysis.
RabadanLab/mage-pipeline
MAGE - Multilevel Analysis of Gene Expression
RabadanLab/MITKats
The Medical Imaging Interaction Toolkit with augmented tools for segmentation (MITKats), an extension of MITK with Threshold Components and Clipping Segmentation features.
RabadanLab/pamler
RabadanLab/sakmapper
Implementation of Mapper Algorithm
RabadanLab/EvoMod
Evolutionary Moduli space visualization and statistics
RabadanLab/GBMsinglecell
RabadanLab/INDEL-seq
Scripts used for INDEL-seq data processing
RabadanLab/spatial_dipg
RabadanLab/dockersavi
Dockerfolder for Docker-ized version of SAVI
RabadanLab/ES
RabadanLab/mutcomfocal
RabadanLab/NORI
NORI (Non-coding RNA Identification), a computational tool to identify lncRNAs using next generation sequencing.
RabadanLab/Pandora
Microbial Signatures in Human RNAseq Data
RabadanLab/PH_recombination_virus
Pipeline to infer recombination rates
RabadanLab/pitp
RabadanLab/proscope
RabadanLab/RabadanLab.github.io
RabadanLab/randomlypage
Webpage for randomly package
RabadanLab/randomlysite
RabadanLab/randomlyView
RabadanLab/Smoother
A Unified and Modular Framework to Incorporate Structural Dependency in Spatial Omics Data
RabadanLab/TARGet
Topological inference of horizontal evolution from multiple sequence alignments
RabadanLab/ViromeOfManhattan